Hb_003988_040

Information

Type -
Description -
Location Contig3988: 41056-43092
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03460g
description hypothetical protein
nr
ID XP_012071708.1
description PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04323 PE=4 SV=1
Gene Ontology
ID GO:0009536
description thioredoxin-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39685: 41053-44054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003988_040 0.0 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
2 Hb_005463_060 0.081724223 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
3 Hb_003607_170 0.0850942657 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
4 Hb_000159_070 0.0916726778 - - JHL03K20.4 [Jatropha curcas]
5 Hb_002897_080 0.0923519705 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
6 Hb_000134_020 0.0947584845 - - thioredoxin-like family protein [Hevea brasiliensis]
7 Hb_000312_090 0.0980122637 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
8 Hb_003226_220 0.1029955754 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
9 Hb_026398_010 0.1044800821 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
10 Hb_007416_020 0.106476747 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
11 Hb_000617_090 0.1106114413 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
12 Hb_000645_190 0.1107553259 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
13 Hb_001045_080 0.1116424693 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
14 Hb_000820_130 0.1119918817 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
15 Hb_000365_080 0.1124316352 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
16 Hb_000046_260 0.1133246395 - - acyl carrier protein, putative [Ricinus communis]
17 Hb_000270_720 0.1143804399 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
18 Hb_007575_070 0.1174475639 - - Histone H3.2 [Glycine soja]
19 Hb_001080_080 0.118874691 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
20 Hb_000526_150 0.1196231619 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_003988_040 Hb_003988_040 Hb_005463_060 Hb_005463_060 Hb_003988_040--Hb_005463_060 Hb_003607_170 Hb_003607_170 Hb_003988_040--Hb_003607_170 Hb_000159_070 Hb_000159_070 Hb_003988_040--Hb_000159_070 Hb_002897_080 Hb_002897_080 Hb_003988_040--Hb_002897_080 Hb_000134_020 Hb_000134_020 Hb_003988_040--Hb_000134_020 Hb_000312_090 Hb_000312_090 Hb_003988_040--Hb_000312_090 Hb_005463_060--Hb_003607_170 Hb_005463_060--Hb_002897_080 Hb_003226_220 Hb_003226_220 Hb_005463_060--Hb_003226_220 Hb_003638_080 Hb_003638_080 Hb_005463_060--Hb_003638_080 Hb_000046_260 Hb_000046_260 Hb_005463_060--Hb_000046_260 Hb_000617_090 Hb_000617_090 Hb_003607_170--Hb_000617_090 Hb_008847_020 Hb_008847_020 Hb_003607_170--Hb_008847_020 Hb_010883_150 Hb_010883_150 Hb_003607_170--Hb_010883_150 Hb_000526_150 Hb_000526_150 Hb_003607_170--Hb_000526_150 Hb_009384_020 Hb_009384_020 Hb_000159_070--Hb_009384_020 Hb_076693_040 Hb_076693_040 Hb_000159_070--Hb_076693_040 Hb_019516_100 Hb_019516_100 Hb_000159_070--Hb_019516_100 Hb_000172_420 Hb_000172_420 Hb_000159_070--Hb_000172_420 Hb_000159_070--Hb_002897_080 Hb_002897_080--Hb_000526_150 Hb_002897_080--Hb_000312_090 Hb_009851_100 Hb_009851_100 Hb_002897_080--Hb_009851_100 Hb_002897_080--Hb_000617_090 Hb_000645_190 Hb_000645_190 Hb_000134_020--Hb_000645_190 Hb_011310_060 Hb_011310_060 Hb_000134_020--Hb_011310_060 Hb_002293_030 Hb_002293_030 Hb_000134_020--Hb_002293_030 Hb_003058_220 Hb_003058_220 Hb_000134_020--Hb_003058_220 Hb_000134_020--Hb_003638_080 Hb_000312_090--Hb_000617_090 Hb_001221_310 Hb_001221_310 Hb_000312_090--Hb_001221_310 Hb_000312_090--Hb_009851_100 Hb_003125_150 Hb_003125_150 Hb_000312_090--Hb_003125_150 Hb_001045_080 Hb_001045_080 Hb_000312_090--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_000312_090--Hb_002835_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1056 5.7179 8.02177 15.4621 9.26056 25.1508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.7687 85.017 16.4488 7.57742 6.04371

CAGE analysis