Hb_003992_020

Information

Type -
Description -
Location Contig3992: 7228-8506
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02670g
description hypothetical protein
nr
ID XP_012073167.1
description PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
swissprot
ID Q9LVZ7
description Phosphatidylcholine:diacylglycerol cholinephosphotransferase 1 OS=Arabidopsis thaliana GN=ROD1 PE=1 SV=1
trembl
ID A0A067KYZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_020 0.0 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
2 Hb_000329_720 0.0948176928 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
3 Hb_043552_010 0.0986207163 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
4 Hb_000375_260 0.1018630367 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
5 Hb_003935_040 0.1092706704 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
6 Hb_000005_360 0.1094999323 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009252_080 0.1106357765 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
8 Hb_009189_100 0.1120453855 - - PREDICTED: patellin-6 [Jatropha curcas]
9 Hb_002171_020 0.1134300765 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
10 Hb_001159_090 0.1166948885 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
11 Hb_001709_090 0.1171317561 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
12 Hb_000162_190 0.1218340657 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
13 Hb_048476_130 0.1266187392 - - scab resistance family protein [Populus trichocarpa]
14 Hb_092975_010 0.1270365121 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
15 Hb_000742_130 0.1295575647 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
16 Hb_001195_550 0.1303132378 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
17 Hb_003055_080 0.1327835024 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
18 Hb_009736_020 0.1328750857 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
19 Hb_006120_130 0.1329296717 - - -
20 Hb_000345_230 0.1330637225 - - -

Gene co-expression network

sample Hb_003992_020 Hb_003992_020 Hb_000329_720 Hb_000329_720 Hb_003992_020--Hb_000329_720 Hb_043552_010 Hb_043552_010 Hb_003992_020--Hb_043552_010 Hb_000375_260 Hb_000375_260 Hb_003992_020--Hb_000375_260 Hb_003935_040 Hb_003935_040 Hb_003992_020--Hb_003935_040 Hb_000005_360 Hb_000005_360 Hb_003992_020--Hb_000005_360 Hb_009252_080 Hb_009252_080 Hb_003992_020--Hb_009252_080 Hb_009189_100 Hb_009189_100 Hb_000329_720--Hb_009189_100 Hb_002171_020 Hb_002171_020 Hb_000329_720--Hb_002171_020 Hb_000329_720--Hb_000005_360 Hb_092975_010 Hb_092975_010 Hb_000329_720--Hb_092975_010 Hb_000365_430 Hb_000365_430 Hb_000329_720--Hb_000365_430 Hb_000742_130 Hb_000742_130 Hb_000329_720--Hb_000742_130 Hb_043552_010--Hb_009252_080 Hb_001709_090 Hb_001709_090 Hb_043552_010--Hb_001709_090 Hb_043552_010--Hb_000375_260 Hb_000162_190 Hb_000162_190 Hb_043552_010--Hb_000162_190 Hb_000310_040 Hb_000310_040 Hb_043552_010--Hb_000310_040 Hb_001159_090 Hb_001159_090 Hb_000375_260--Hb_001159_090 Hb_000375_260--Hb_001709_090 Hb_006120_130 Hb_006120_130 Hb_000375_260--Hb_006120_130 Hb_002028_270 Hb_002028_270 Hb_000375_260--Hb_002028_270 Hb_003935_040--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_003935_040--Hb_000345_230 Hb_000310_110 Hb_000310_110 Hb_003935_040--Hb_000310_110 Hb_000020_050 Hb_000020_050 Hb_003935_040--Hb_000020_050 Hb_015934_080 Hb_015934_080 Hb_003935_040--Hb_015934_080 Hb_003935_040--Hb_009189_100 Hb_000005_360--Hb_002171_020 Hb_000005_360--Hb_009189_100 Hb_012404_020 Hb_012404_020 Hb_000005_360--Hb_012404_020 Hb_000005_360--Hb_000742_130 Hb_009113_080 Hb_009113_080 Hb_000005_360--Hb_009113_080 Hb_009252_080--Hb_001709_090 Hb_025787_020 Hb_025787_020 Hb_009252_080--Hb_025787_020 Hb_001056_040 Hb_001056_040 Hb_009252_080--Hb_001056_040 Hb_009252_080--Hb_000162_190 Hb_009252_080--Hb_000345_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0270413 0.453513 1.50547 2.42346 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.048855 0 0.335474 0.493302

CAGE analysis