Hb_003992_030

Information

Type -
Description -
Location Contig3992: 9811-10580
Sequence    

Annotation

kegg
ID rcu:RCOM_0900590
description hypothetical protein
nr
ID KHG11163.1
description Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0N9E6
description Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Gossypium arboreum GN=F383_16423 PE=4 SV=1
Gene Ontology
ID GO:0009570
description post-illumination chlorophyll fluorescence increase isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39697: 9827-12790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_030 0.0 - - Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Gossypium arboreum]
2 Hb_001105_050 0.1253180483 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
3 Hb_048141_030 0.1353575675 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
4 Hb_002471_180 0.1406183467 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_000156_160 0.1421349334 - - PREDICTED: urease accessory protein G [Jatropha curcas]
6 Hb_000735_100 0.1427563104 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
7 Hb_003638_010 0.143614263 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
8 Hb_016734_090 0.1444769875 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
9 Hb_008246_030 0.1447184636 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
10 Hb_001163_120 0.1463926496 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_001213_130 0.1469948879 - - PREDICTED: fructokinase-like 1, chloroplastic [Jatropha curcas]
12 Hb_000538_260 0.1481863804 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
13 Hb_000042_340 0.1487412677 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
14 Hb_000270_160 0.1494300367 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
15 Hb_000175_590 0.1499124188 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
16 Hb_000170_060 0.1500865121 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
17 Hb_000363_380 0.1502813374 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
18 Hb_000139_230 0.1503915293 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
19 Hb_001652_080 0.1505443936 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
20 Hb_002681_170 0.1506542359 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]

Gene co-expression network

sample Hb_003992_030 Hb_003992_030 Hb_001105_050 Hb_001105_050 Hb_003992_030--Hb_001105_050 Hb_048141_030 Hb_048141_030 Hb_003992_030--Hb_048141_030 Hb_002471_180 Hb_002471_180 Hb_003992_030--Hb_002471_180 Hb_000156_160 Hb_000156_160 Hb_003992_030--Hb_000156_160 Hb_000735_100 Hb_000735_100 Hb_003992_030--Hb_000735_100 Hb_003638_010 Hb_003638_010 Hb_003992_030--Hb_003638_010 Hb_065525_130 Hb_065525_130 Hb_001105_050--Hb_065525_130 Hb_000085_140 Hb_000085_140 Hb_001105_050--Hb_000085_140 Hb_005288_080 Hb_005288_080 Hb_001105_050--Hb_005288_080 Hb_000436_100 Hb_000436_100 Hb_001105_050--Hb_000436_100 Hb_000042_340 Hb_000042_340 Hb_001105_050--Hb_000042_340 Hb_001105_050--Hb_003638_010 Hb_048141_030--Hb_065525_130 Hb_000175_590 Hb_000175_590 Hb_048141_030--Hb_000175_590 Hb_000015_100 Hb_000015_100 Hb_048141_030--Hb_000015_100 Hb_006570_010 Hb_006570_010 Hb_048141_030--Hb_006570_010 Hb_048141_030--Hb_000085_140 Hb_000948_170 Hb_000948_170 Hb_048141_030--Hb_000948_170 Hb_048476_150 Hb_048476_150 Hb_002471_180--Hb_048476_150 Hb_000139_230 Hb_000139_230 Hb_002471_180--Hb_000139_230 Hb_001021_220 Hb_001021_220 Hb_002471_180--Hb_001021_220 Hb_098209_010 Hb_098209_010 Hb_002471_180--Hb_098209_010 Hb_002902_020 Hb_002902_020 Hb_002471_180--Hb_002902_020 Hb_000376_060 Hb_000376_060 Hb_002471_180--Hb_000376_060 Hb_002092_100 Hb_002092_100 Hb_000156_160--Hb_002092_100 Hb_000156_160--Hb_005288_080 Hb_000922_020 Hb_000922_020 Hb_000156_160--Hb_000922_020 Hb_016734_090 Hb_016734_090 Hb_000156_160--Hb_016734_090 Hb_000661_020 Hb_000661_020 Hb_000156_160--Hb_000661_020 Hb_011918_050 Hb_011918_050 Hb_000156_160--Hb_011918_050 Hb_028872_120 Hb_028872_120 Hb_000735_100--Hb_028872_120 Hb_000025_650 Hb_000025_650 Hb_000735_100--Hb_000025_650 Hb_002249_120 Hb_002249_120 Hb_000735_100--Hb_002249_120 Hb_005408_020 Hb_005408_020 Hb_000735_100--Hb_005408_020 Hb_000735_100--Hb_000661_020 Hb_000076_260 Hb_000076_260 Hb_000735_100--Hb_000076_260 Hb_002571_030 Hb_002571_030 Hb_003638_010--Hb_002571_030 Hb_007818_040 Hb_007818_040 Hb_003638_010--Hb_007818_040 Hb_007305_020 Hb_007305_020 Hb_003638_010--Hb_007305_020 Hb_009449_090 Hb_009449_090 Hb_003638_010--Hb_009449_090 Hb_000024_120 Hb_000024_120 Hb_003638_010--Hb_000024_120 Hb_006573_160 Hb_006573_160 Hb_003638_010--Hb_006573_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.64706 4.69257 5.98677 2.13993 6.31377 6.33531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36456 1.07188 1.19142 0.498864 5.25189

CAGE analysis