Hb_003992_080

Information

Type -
Description -
Location Contig3992: 67268-68776
Sequence    

Annotation

kegg
ID rcu:RCOM_0900240
description GTP binding protein, putative
nr
ID XP_012073172.1
description PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
swissprot
ID Q9LVZ8
description Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1
trembl
ID A0A067KLF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06137 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39700: 67268-68834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_080 0.0 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
2 Hb_016604_020 0.1229034176 - - -
3 Hb_002053_060 0.1447426316 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
4 Hb_033772_050 0.1535315176 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
5 Hb_002298_050 0.1568117515 - - serine/threonine-protein kinase, putative [Ricinus communis]
6 Hb_000094_110 0.1588099246 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009486_190 0.1660873485 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001052_030 0.1726090054 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
9 Hb_009787_040 0.1759401976 desease resistance Gene Name: AAA_17 PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
10 Hb_000373_180 0.1765679183 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
11 Hb_003044_090 0.1766017283 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
12 Hb_003847_020 0.181028018 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_148850_010 0.1843447079 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
14 Hb_007044_060 0.1847862087 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000260_310 0.18636508 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
16 Hb_015807_140 0.1875036293 - - small heat-shock protein, putative [Ricinus communis]
17 Hb_000264_090 0.1886015032 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
18 Hb_002182_060 0.188837788 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
19 Hb_002811_230 0.1900663086 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
20 Hb_000563_240 0.1913824001 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]

Gene co-expression network

sample Hb_003992_080 Hb_003992_080 Hb_016604_020 Hb_016604_020 Hb_003992_080--Hb_016604_020 Hb_002053_060 Hb_002053_060 Hb_003992_080--Hb_002053_060 Hb_033772_050 Hb_033772_050 Hb_003992_080--Hb_033772_050 Hb_002298_050 Hb_002298_050 Hb_003992_080--Hb_002298_050 Hb_000094_110 Hb_000094_110 Hb_003992_080--Hb_000094_110 Hb_009486_190 Hb_009486_190 Hb_003992_080--Hb_009486_190 Hb_016604_020--Hb_002053_060 Hb_002609_280 Hb_002609_280 Hb_016604_020--Hb_002609_280 Hb_003216_100 Hb_003216_100 Hb_016604_020--Hb_003216_100 Hb_002182_060 Hb_002182_060 Hb_016604_020--Hb_002182_060 Hb_000264_090 Hb_000264_090 Hb_016604_020--Hb_000264_090 Hb_002759_230 Hb_002759_230 Hb_002053_060--Hb_002759_230 Hb_003106_050 Hb_003106_050 Hb_002053_060--Hb_003106_050 Hb_000099_060 Hb_000099_060 Hb_002053_060--Hb_000099_060 Hb_002909_060 Hb_002909_060 Hb_002053_060--Hb_002909_060 Hb_002053_060--Hb_002182_060 Hb_000363_140 Hb_000363_140 Hb_033772_050--Hb_000363_140 Hb_033772_050--Hb_009486_190 Hb_005568_080 Hb_005568_080 Hb_033772_050--Hb_005568_080 Hb_000326_060 Hb_000326_060 Hb_033772_050--Hb_000326_060 Hb_004129_150 Hb_004129_150 Hb_033772_050--Hb_004129_150 Hb_000373_180 Hb_000373_180 Hb_002298_050--Hb_000373_180 Hb_005841_050 Hb_005841_050 Hb_002298_050--Hb_005841_050 Hb_000264_020 Hb_000264_020 Hb_002298_050--Hb_000264_020 Hb_003326_020 Hb_003326_020 Hb_002298_050--Hb_003326_020 Hb_146225_010 Hb_146225_010 Hb_002298_050--Hb_146225_010 Hb_002298_050--Hb_002053_060 Hb_001052_030 Hb_001052_030 Hb_000094_110--Hb_001052_030 Hb_003847_020 Hb_003847_020 Hb_000094_110--Hb_003847_020 Hb_000175_130 Hb_000175_130 Hb_000094_110--Hb_000175_130 Hb_000094_110--Hb_146225_010 Hb_001386_050 Hb_001386_050 Hb_000094_110--Hb_001386_050 Hb_002918_140 Hb_002918_140 Hb_000094_110--Hb_002918_140 Hb_002798_060 Hb_002798_060 Hb_009486_190--Hb_002798_060 Hb_000196_090 Hb_000196_090 Hb_009486_190--Hb_000196_090 Hb_009486_190--Hb_016604_020 Hb_002540_030 Hb_002540_030 Hb_009486_190--Hb_002540_030 Hb_009486_190--Hb_002609_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
128.755 84.8679 10.1954 35.5724 41.1283 30.2047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.2 345.918 161.336 38.6262 6.41027

CAGE analysis