Hb_003992_120

Information

Type -
Description -
Location Contig3992: 74928-78327
Sequence    

Annotation

kegg
ID mtr:MTR_6g089560
description hypothetical protein
nr
ID AES76948.2
description hypothetical protein MTR_6g089560 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7KQF4
description Uncharacterized protein OS=Medicago truncatula GN=MTR_6g089560 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_120 0.0 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
2 Hb_002843_190 0.2030502916 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 7 isoform X1 [Jatropha curcas]
3 Hb_010812_090 0.2312570499 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
4 Hb_035905_010 0.2358614635 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
5 Hb_010128_110 0.2396088641 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
6 Hb_001141_400 0.243564503 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
7 Hb_026766_010 0.2440557866 - - -
8 Hb_002259_050 0.2478992431 - - unnamed protein product [Vitis vinifera]
9 Hb_006502_040 0.2529132933 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
10 Hb_027751_030 0.2540888344 - - -
11 Hb_000922_180 0.2614476275 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
12 Hb_028365_010 0.2665854327 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
13 Hb_000861_050 0.2686770866 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
14 Hb_004584_010 0.2717483387 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
15 Hb_027751_040 0.2785813073 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
16 Hb_000614_330 0.2788274098 - - hypothetical protein POPTR_0008s18070g [Populus trichocarpa]
17 Hb_000373_300 0.2852852781 - - hypothetical protein F775_20382 [Aegilops tauschii]
18 Hb_005410_030 0.2880607051 - - glutaredoxin 2 [Hevea brasiliensis]
19 Hb_175450_010 0.2881984206 - - -
20 Hb_065642_010 0.2983077196 - - -

Gene co-expression network

sample Hb_003992_120 Hb_003992_120 Hb_002843_190 Hb_002843_190 Hb_003992_120--Hb_002843_190 Hb_010812_090 Hb_010812_090 Hb_003992_120--Hb_010812_090 Hb_035905_010 Hb_035905_010 Hb_003992_120--Hb_035905_010 Hb_010128_110 Hb_010128_110 Hb_003992_120--Hb_010128_110 Hb_001141_400 Hb_001141_400 Hb_003992_120--Hb_001141_400 Hb_026766_010 Hb_026766_010 Hb_003992_120--Hb_026766_010 Hb_028365_010 Hb_028365_010 Hb_002843_190--Hb_028365_010 Hb_027751_040 Hb_027751_040 Hb_002843_190--Hb_027751_040 Hb_027751_030 Hb_027751_030 Hb_002843_190--Hb_027751_030 Hb_002843_190--Hb_010128_110 Hb_001980_020 Hb_001980_020 Hb_002843_190--Hb_001980_020 Hb_006502_040 Hb_006502_040 Hb_010812_090--Hb_006502_040 Hb_010812_090--Hb_010128_110 Hb_000567_280 Hb_000567_280 Hb_010812_090--Hb_000567_280 Hb_000861_050 Hb_000861_050 Hb_010812_090--Hb_000861_050 Hb_074197_010 Hb_074197_010 Hb_010812_090--Hb_074197_010 Hb_004691_040 Hb_004691_040 Hb_035905_010--Hb_004691_040 Hb_000260_450 Hb_000260_450 Hb_035905_010--Hb_000260_450 Hb_004116_110 Hb_004116_110 Hb_035905_010--Hb_004116_110 Hb_035905_010--Hb_001141_400 Hb_000061_350 Hb_000061_350 Hb_035905_010--Hb_000061_350 Hb_001631_080 Hb_001631_080 Hb_010128_110--Hb_001631_080 Hb_000175_040 Hb_000175_040 Hb_010128_110--Hb_000175_040 Hb_010128_110--Hb_001141_400 Hb_010128_110--Hb_028365_010 Hb_003756_010 Hb_003756_010 Hb_010128_110--Hb_003756_010 Hb_000373_300 Hb_000373_300 Hb_001141_400--Hb_000373_300 Hb_002742_010 Hb_002742_010 Hb_001141_400--Hb_002742_010 Hb_001141_400--Hb_028365_010 Hb_188382_010 Hb_188382_010 Hb_001141_400--Hb_188382_010 Hb_159085_010 Hb_159085_010 Hb_001141_400--Hb_159085_010 Hb_026766_010--Hb_027751_030 Hb_000284_160 Hb_000284_160 Hb_026766_010--Hb_000284_160 Hb_004584_010 Hb_004584_010 Hb_026766_010--Hb_004584_010 Hb_000614_330 Hb_000614_330 Hb_026766_010--Hb_000614_330 Hb_000603_240 Hb_000603_240 Hb_026766_010--Hb_000603_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.379517 0 0 0 0.0249089 0.0310259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.427071 0.191907 0 0.0193706 0

CAGE analysis