Hb_003992_170

Information

Type -
Description -
Location Contig3992: 103336-104585
Sequence    

Annotation

kegg
ID pop:POPTR_0001s19290g
description POPTRDRAFT_751886; hypothetical protein
nr
ID XP_011012352.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
swissprot
ID Q9ZQG9
description Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500 PE=1 SV=2
trembl
ID B9GH37
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s19290g PE=3 SV=2
Gene Ontology
ID GO:0031225
description glucan endo- -beta-glucosidase 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39702: 104192-104504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_170 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
2 Hb_000059_050 0.0889552718 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
3 Hb_001946_330 0.101934308 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
4 Hb_000749_270 0.1112666674 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
5 Hb_002284_310 0.1126418767 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
6 Hb_004079_030 0.1224783901 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
7 Hb_000836_040 0.1244253575 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
8 Hb_000085_400 0.1247758496 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
9 Hb_034013_020 0.1282732653 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
10 Hb_003086_080 0.1292910697 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
11 Hb_017110_010 0.1294201848 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
12 Hb_001545_100 0.1320919595 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
13 Hb_006711_060 0.1333851981 - - Tubulin beta-1 chain [Morus notabilis]
14 Hb_000617_200 0.1334581676 - - f-actin capping protein alpha, putative [Ricinus communis]
15 Hb_119600_070 0.1339313901 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
16 Hb_009339_030 0.139112129 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
17 Hb_007904_260 0.1392038393 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
18 Hb_002027_040 0.1394311193 - - synapse-associated protein, putative [Ricinus communis]
19 Hb_003540_030 0.1401683366 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
20 Hb_001662_060 0.1403893345 - - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_003992_170 Hb_003992_170 Hb_000059_050 Hb_000059_050 Hb_003992_170--Hb_000059_050 Hb_001946_330 Hb_001946_330 Hb_003992_170--Hb_001946_330 Hb_000749_270 Hb_000749_270 Hb_003992_170--Hb_000749_270 Hb_002284_310 Hb_002284_310 Hb_003992_170--Hb_002284_310 Hb_004079_030 Hb_004079_030 Hb_003992_170--Hb_004079_030 Hb_000836_040 Hb_000836_040 Hb_003992_170--Hb_000836_040 Hb_000059_050--Hb_004079_030 Hb_119600_070 Hb_119600_070 Hb_000059_050--Hb_119600_070 Hb_000059_050--Hb_001946_330 Hb_000066_080 Hb_000066_080 Hb_000059_050--Hb_000066_080 Hb_000047_030 Hb_000047_030 Hb_000059_050--Hb_000047_030 Hb_000853_190 Hb_000853_190 Hb_001946_330--Hb_000853_190 Hb_001545_100 Hb_001545_100 Hb_001946_330--Hb_001545_100 Hb_000436_130 Hb_000436_130 Hb_001946_330--Hb_000436_130 Hb_009339_030 Hb_009339_030 Hb_001946_330--Hb_009339_030 Hb_004078_040 Hb_004078_040 Hb_000749_270--Hb_004078_040 Hb_001799_210 Hb_001799_210 Hb_000749_270--Hb_001799_210 Hb_000925_130 Hb_000925_130 Hb_000749_270--Hb_000925_130 Hb_000465_160 Hb_000465_160 Hb_000749_270--Hb_000465_160 Hb_000749_270--Hb_009339_030 Hb_000393_020 Hb_000393_020 Hb_000749_270--Hb_000393_020 Hb_000603_230 Hb_000603_230 Hb_002284_310--Hb_000603_230 Hb_000331_460 Hb_000331_460 Hb_002284_310--Hb_000331_460 Hb_002871_190 Hb_002871_190 Hb_002284_310--Hb_002871_190 Hb_004225_080 Hb_004225_080 Hb_002284_310--Hb_004225_080 Hb_004346_030 Hb_004346_030 Hb_002284_310--Hb_004346_030 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_002027_040 Hb_002027_040 Hb_004079_030--Hb_002027_040 Hb_001811_030 Hb_001811_030 Hb_004079_030--Hb_001811_030 Hb_002005_020 Hb_002005_020 Hb_004079_030--Hb_002005_020 Hb_004079_030--Hb_119600_070 Hb_000258_270 Hb_000258_270 Hb_000836_040--Hb_000258_270 Hb_030565_030 Hb_030565_030 Hb_000836_040--Hb_030565_030 Hb_004724_080 Hb_004724_080 Hb_000836_040--Hb_004724_080 Hb_000003_250 Hb_000003_250 Hb_000836_040--Hb_000003_250 Hb_004052_090 Hb_004052_090 Hb_000836_040--Hb_004052_090 Hb_000836_040--Hb_000047_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51826 0.603766 1.1228 2.14671 1.06438 1.16338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80948 1.68814 4.05757 0.47763 1.98316

CAGE analysis