Hb_003992_180

Information

Type -
Description -
Location Contig3992: 106438-112409
Sequence    

Annotation

kegg
ID rcu:RCOM_0900000
description Nucleosome-binding protein, putative
nr
ID XP_012073176.1
description PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
swissprot
ID Q9LW00
description Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana GN=MBD11 PE=1 SV=1
trembl
ID A0A067KZ09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39703: 106301-112283 , PASA_asmbl_39705: 111371-112197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_180 0.0 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
2 Hb_030545_030 0.0769264531 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
3 Hb_006615_030 0.076998307 - - prolyl oligopeptidase family protein [Populus trichocarpa]
4 Hb_012305_140 0.0770101111 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
5 Hb_004526_010 0.0803997939 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
6 Hb_001558_060 0.0820893311 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
7 Hb_005694_130 0.0828494875 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
8 Hb_000227_310 0.083202399 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
9 Hb_006132_040 0.0849167856 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
10 Hb_004319_050 0.0864829497 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
11 Hb_002903_140 0.0867433935 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
12 Hb_003895_020 0.0892439097 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
13 Hb_007017_070 0.0923753664 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
14 Hb_011249_060 0.0935143641 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
15 Hb_004319_070 0.093699483 - - hypothetical protein RCOM_0852460 [Ricinus communis]
16 Hb_008165_030 0.0939128903 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
17 Hb_000796_120 0.0942927645 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
18 Hb_002056_100 0.0953265706 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
19 Hb_000454_140 0.0957304925 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
20 Hb_000866_080 0.0979081539 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003992_180 Hb_003992_180 Hb_030545_030 Hb_030545_030 Hb_003992_180--Hb_030545_030 Hb_006615_030 Hb_006615_030 Hb_003992_180--Hb_006615_030 Hb_012305_140 Hb_012305_140 Hb_003992_180--Hb_012305_140 Hb_004526_010 Hb_004526_010 Hb_003992_180--Hb_004526_010 Hb_001558_060 Hb_001558_060 Hb_003992_180--Hb_001558_060 Hb_005694_130 Hb_005694_130 Hb_003992_180--Hb_005694_130 Hb_002903_140 Hb_002903_140 Hb_030545_030--Hb_002903_140 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_007017_070 Hb_007017_070 Hb_030545_030--Hb_007017_070 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_096819_010 Hb_096819_010 Hb_030545_030--Hb_096819_010 Hb_002248_130 Hb_002248_130 Hb_006615_030--Hb_002248_130 Hb_003895_020 Hb_003895_020 Hb_006615_030--Hb_003895_020 Hb_000179_190 Hb_000179_190 Hb_006615_030--Hb_000179_190 Hb_001911_010 Hb_001911_010 Hb_006615_030--Hb_001911_010 Hb_001410_130 Hb_001410_130 Hb_006615_030--Hb_001410_130 Hb_012305_140--Hb_005694_130 Hb_000454_140 Hb_000454_140 Hb_012305_140--Hb_000454_140 Hb_010368_080 Hb_010368_080 Hb_012305_140--Hb_010368_080 Hb_007849_050 Hb_007849_050 Hb_012305_140--Hb_007849_050 Hb_002609_190 Hb_002609_190 Hb_012305_140--Hb_002609_190 Hb_004319_050 Hb_004319_050 Hb_004526_010--Hb_004319_050 Hb_000796_120 Hb_000796_120 Hb_004526_010--Hb_000796_120 Hb_004526_010--Hb_030545_030 Hb_009486_160 Hb_009486_160 Hb_004526_010--Hb_009486_160 Hb_159295_010 Hb_159295_010 Hb_004526_010--Hb_159295_010 Hb_023226_070 Hb_023226_070 Hb_001558_060--Hb_023226_070 Hb_000375_290 Hb_000375_290 Hb_001558_060--Hb_000375_290 Hb_001558_060--Hb_008165_030 Hb_000579_190 Hb_000579_190 Hb_001558_060--Hb_000579_190 Hb_002811_040 Hb_002811_040 Hb_001558_060--Hb_002811_040 Hb_003001_070 Hb_003001_070 Hb_005694_130--Hb_003001_070 Hb_000609_110 Hb_000609_110 Hb_005694_130--Hb_000609_110 Hb_005694_130--Hb_000454_140 Hb_000805_200 Hb_000805_200 Hb_005694_130--Hb_000805_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.7245 229.364 181.006 65.7954 76.9744 72.0537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.1528 32.3562 35.9246 67.1969 87.0825

CAGE analysis