Hb_003992_240

Information

Type -
Description -
Location Contig3992: 144370-147103
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_240 0.0 - - -
2 Hb_011609_100 0.0733688878 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
3 Hb_114893_030 0.0898154774 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
4 Hb_000788_100 0.0935211706 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
5 Hb_000012_220 0.0945380748 - - conserved hypothetical protein [Ricinus communis]
6 Hb_015279_010 0.0952886009 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
7 Hb_022425_040 0.0959492059 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
8 Hb_001540_010 0.0980362174 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
9 Hb_006031_020 0.0988519035 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
10 Hb_000251_130 0.0991600351 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
11 Hb_002759_150 0.0998859635 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
12 Hb_012762_050 0.0998922008 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
13 Hb_000127_180 0.1007858942 - - 40S ribosomal protein S18, putative [Ricinus communis]
14 Hb_001252_110 0.101273448 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
15 Hb_001226_160 0.1029697766 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
16 Hb_001766_110 0.1031620714 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
17 Hb_000056_200 0.1039377175 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
18 Hb_001159_140 0.1049901727 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
19 Hb_002397_070 0.1057804454 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
20 Hb_000904_070 0.107229144 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003992_240 Hb_003992_240 Hb_011609_100 Hb_011609_100 Hb_003992_240--Hb_011609_100 Hb_114893_030 Hb_114893_030 Hb_003992_240--Hb_114893_030 Hb_000788_100 Hb_000788_100 Hb_003992_240--Hb_000788_100 Hb_000012_220 Hb_000012_220 Hb_003992_240--Hb_000012_220 Hb_015279_010 Hb_015279_010 Hb_003992_240--Hb_015279_010 Hb_022425_040 Hb_022425_040 Hb_003992_240--Hb_022425_040 Hb_005322_040 Hb_005322_040 Hb_011609_100--Hb_005322_040 Hb_003125_200 Hb_003125_200 Hb_011609_100--Hb_003125_200 Hb_047503_010 Hb_047503_010 Hb_011609_100--Hb_047503_010 Hb_000959_210 Hb_000959_210 Hb_011609_100--Hb_000959_210 Hb_002346_020 Hb_002346_020 Hb_011609_100--Hb_002346_020 Hb_002518_080 Hb_002518_080 Hb_114893_030--Hb_002518_080 Hb_114893_030--Hb_022425_040 Hb_000258_350 Hb_000258_350 Hb_114893_030--Hb_000258_350 Hb_000917_110 Hb_000917_110 Hb_114893_030--Hb_000917_110 Hb_000127_180 Hb_000127_180 Hb_114893_030--Hb_000127_180 Hb_114893_030--Hb_015279_010 Hb_011316_050 Hb_011316_050 Hb_000788_100--Hb_011316_050 Hb_000904_070 Hb_000904_070 Hb_000788_100--Hb_000904_070 Hb_012762_050 Hb_012762_050 Hb_000788_100--Hb_012762_050 Hb_005332_070 Hb_005332_070 Hb_000788_100--Hb_005332_070 Hb_135545_010 Hb_135545_010 Hb_000788_100--Hb_135545_010 Hb_000012_220--Hb_005322_040 Hb_000012_220--Hb_000127_180 Hb_003528_060 Hb_003528_060 Hb_000012_220--Hb_003528_060 Hb_003050_080 Hb_003050_080 Hb_000012_220--Hb_003050_080 Hb_000487_250 Hb_000487_250 Hb_000012_220--Hb_000487_250 Hb_002868_010 Hb_002868_010 Hb_000012_220--Hb_002868_010 Hb_015279_010--Hb_022425_040 Hb_003787_010 Hb_003787_010 Hb_015279_010--Hb_003787_010 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_004116_190 Hb_004116_190 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_011671_100 Hb_011671_100 Hb_015279_010--Hb_011671_100 Hb_000815_060 Hb_000815_060 Hb_022425_040--Hb_000815_060 Hb_022425_040--Hb_002518_080 Hb_000217_030 Hb_000217_030 Hb_022425_040--Hb_000217_030 Hb_022425_040--Hb_000127_180 Hb_001832_060 Hb_001832_060 Hb_022425_040--Hb_001832_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6243 9.19373 5.90064 4.13505 9.79613 10.1162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.67702 26.3963 12.0989 6.20285 5.36146

CAGE analysis