Hb_003992_260

Information

Type -
Description -
Location Contig3992: 152192-153136
Sequence    

Annotation

kegg
ID rcu:RCOM_0899650
description small heat-shock protein, putative
nr
ID XP_012073183.1
description PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Jatropha curcas]
swissprot
ID Q9SSQ8
description 26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1
trembl
ID A0A067KZ15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06145 PE=3 SV=1
Gene Ontology
ID GO:0005739
description kda heat shock mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39713: 152128-153184
cDNA
(Sanger)
(ID:Location)		 005_M05.ab1: 152287-153164 , 024_C06.ab1: 152299-153166

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_260 0.0 - - PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Jatropha curcas]
2 Hb_006846_100 0.17269591 - - hypothetical protein POPTR_0012s11270g [Populus trichocarpa]
3 Hb_004846_180 0.1935550319 - - heat shock protein, putative [Ricinus communis]
4 Hb_001723_110 0.2007016563 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
5 Hb_007382_020 0.2106536831 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
6 Hb_006846_090 0.2117426706 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
7 Hb_043629_020 0.2176350726 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
8 Hb_008749_050 0.2178497701 - - PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Jatropha curcas]
9 Hb_000227_420 0.2194883221 - - PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]
10 Hb_025194_030 0.2211485533 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
11 Hb_009680_030 0.2306115643 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
12 Hb_002374_440 0.2310094105 - - conserved hypothetical protein [Ricinus communis]
13 Hb_029388_040 0.2327778419 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
14 Hb_001769_020 0.2343786659 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
15 Hb_000115_170 0.23710192 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
16 Hb_000739_290 0.2429053841 - - cytochrome P450, putative [Ricinus communis]
17 Hb_012340_020 0.2431525008 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
18 Hb_000008_230 0.2513716452 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
19 Hb_000206_130 0.2521483156 - - unnamed protein product [Vitis vinifera]
20 Hb_182807_020 0.2547278546 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_003992_260 Hb_003992_260 Hb_006846_100 Hb_006846_100 Hb_003992_260--Hb_006846_100 Hb_004846_180 Hb_004846_180 Hb_003992_260--Hb_004846_180 Hb_001723_110 Hb_001723_110 Hb_003992_260--Hb_001723_110 Hb_007382_020 Hb_007382_020 Hb_003992_260--Hb_007382_020 Hb_006846_090 Hb_006846_090 Hb_003992_260--Hb_006846_090 Hb_043629_020 Hb_043629_020 Hb_003992_260--Hb_043629_020 Hb_009680_030 Hb_009680_030 Hb_006846_100--Hb_009680_030 Hb_006846_100--Hb_043629_020 Hb_006846_100--Hb_006846_090 Hb_002311_250 Hb_002311_250 Hb_006846_100--Hb_002311_250 Hb_000115_170 Hb_000115_170 Hb_006846_100--Hb_000115_170 Hb_025194_030 Hb_025194_030 Hb_004846_180--Hb_025194_030 Hb_182807_020 Hb_182807_020 Hb_004846_180--Hb_182807_020 Hb_184326_010 Hb_184326_010 Hb_004846_180--Hb_184326_010 Hb_008749_050 Hb_008749_050 Hb_004846_180--Hb_008749_050 Hb_000853_300 Hb_000853_300 Hb_004846_180--Hb_000853_300 Hb_004846_180--Hb_007382_020 Hb_003647_120 Hb_003647_120 Hb_001723_110--Hb_003647_120 Hb_001279_230 Hb_001279_230 Hb_001723_110--Hb_001279_230 Hb_001723_110--Hb_004846_180 Hb_027255_010 Hb_027255_010 Hb_001723_110--Hb_027255_010 Hb_000398_130 Hb_000398_130 Hb_001723_110--Hb_000398_130 Hb_007382_020--Hb_025194_030 Hb_007382_020--Hb_008749_050 Hb_007382_020--Hb_184326_010 Hb_168978_040 Hb_168978_040 Hb_007382_020--Hb_168978_040 Hb_006846_090--Hb_009680_030 Hb_002983_020 Hb_002983_020 Hb_006846_090--Hb_002983_020 Hb_006846_090--Hb_002311_250 Hb_000317_080 Hb_000317_080 Hb_006846_090--Hb_000317_080 Hb_029388_040 Hb_029388_040 Hb_006846_090--Hb_029388_040 Hb_164732_010 Hb_164732_010 Hb_006846_090--Hb_164732_010 Hb_000227_420 Hb_000227_420 Hb_043629_020--Hb_000227_420 Hb_043629_020--Hb_000115_170 Hb_003462_010 Hb_003462_010 Hb_043629_020--Hb_003462_010 Hb_005116_020 Hb_005116_020 Hb_043629_020--Hb_005116_020 Hb_002232_200 Hb_002232_200 Hb_043629_020--Hb_002232_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
151.385 241.109 0.771866 3.50542 1712.01 449.859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.6297 169.619 177.119 6.93202 1.18077

CAGE analysis