Hb_003992_270

Information

Type -
Description -
Location Contig3992: 154067-160417
Sequence    

Annotation

kegg
ID rcu:RCOM_0899640
description hypothetical protein
nr
ID XP_012073189.1
description PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06146 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_270 0.0 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
2 Hb_000261_160 0.0749087551 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
3 Hb_000527_060 0.0757302435 - - Protein C20orf11, putative [Ricinus communis]
4 Hb_008071_020 0.0785418044 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
5 Hb_002171_060 0.082726571 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000457_180 0.0827730886 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
7 Hb_001931_010 0.0839202852 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
8 Hb_000115_220 0.0842579052 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
9 Hb_012286_030 0.0853433246 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
10 Hb_001341_150 0.0858168195 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
11 Hb_017895_040 0.0859222577 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
12 Hb_004108_070 0.0862211185 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
13 Hb_001195_480 0.0888703504 - - cop9 complex subunit, putative [Ricinus communis]
14 Hb_000390_300 0.09222713 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
15 Hb_001341_090 0.0924379465 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
16 Hb_004157_040 0.0934594978 - - Rab2 [Hevea brasiliensis]
17 Hb_000193_110 0.0943095357 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
18 Hb_024439_010 0.0957010463 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
19 Hb_001279_080 0.0963834816 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
20 Hb_006693_020 0.0965801322 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]

Gene co-expression network

sample Hb_003992_270 Hb_003992_270 Hb_000261_160 Hb_000261_160 Hb_003992_270--Hb_000261_160 Hb_000527_060 Hb_000527_060 Hb_003992_270--Hb_000527_060 Hb_008071_020 Hb_008071_020 Hb_003992_270--Hb_008071_020 Hb_002171_060 Hb_002171_060 Hb_003992_270--Hb_002171_060 Hb_000457_180 Hb_000457_180 Hb_003992_270--Hb_000457_180 Hb_001931_010 Hb_001931_010 Hb_003992_270--Hb_001931_010 Hb_000261_160--Hb_002171_060 Hb_000261_160--Hb_008071_020 Hb_001195_480 Hb_001195_480 Hb_000261_160--Hb_001195_480 Hb_000261_160--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_000261_160--Hb_001279_080 Hb_012286_030 Hb_012286_030 Hb_000527_060--Hb_012286_030 Hb_001123_130 Hb_001123_130 Hb_000527_060--Hb_001123_130 Hb_000261_140 Hb_000261_140 Hb_000527_060--Hb_000261_140 Hb_000115_220 Hb_000115_220 Hb_000527_060--Hb_000115_220 Hb_004143_150 Hb_004143_150 Hb_000527_060--Hb_004143_150 Hb_000920_110 Hb_000920_110 Hb_000527_060--Hb_000920_110 Hb_008071_020--Hb_001931_010 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_161574_020 Hb_161574_020 Hb_002171_060--Hb_161574_020 Hb_007878_010 Hb_007878_010 Hb_002171_060--Hb_007878_010 Hb_002171_060--Hb_001931_010 Hb_000390_300 Hb_000390_300 Hb_002171_060--Hb_000390_300 Hb_000005_090 Hb_000005_090 Hb_002171_060--Hb_000005_090 Hb_001341_150 Hb_001341_150 Hb_000457_180--Hb_001341_150 Hb_003362_030 Hb_003362_030 Hb_000457_180--Hb_003362_030 Hb_000457_180--Hb_008071_020 Hb_012565_070 Hb_012565_070 Hb_000457_180--Hb_012565_070 Hb_000457_180--Hb_001279_080 Hb_150651_040 Hb_150651_040 Hb_000457_180--Hb_150651_040 Hb_001931_010--Hb_006326_040 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001931_010--Hb_001279_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4991 13.9856 29.9022 29.9091 23.8068 14.9069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9454 51.0333 22.5209 11.6611 15.7477

CAGE analysis