Hb_003992_280

Information

Type -
Description -
Location Contig3992: 164625-165252
Sequence    

Annotation

kegg
ID pop:POPTR_0001s19340g
description POPTRDRAFT_1067701; hypothetical protein
nr
ID XP_011014125.1
description PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PGU9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s19340g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39717: 164541-165246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_280 0.0 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
2 Hb_000300_190 0.0626902012 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
3 Hb_003728_110 0.0836551457 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
4 Hb_003055_080 0.1199931873 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
5 Hb_002965_060 0.1234904137 - - Protein COBRA precursor, putative [Ricinus communis]
6 Hb_001195_550 0.1279829587 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
7 Hb_000020_050 0.1302015047 - - PREDICTED: expansin-A6 [Jatropha curcas]
8 Hb_003935_040 0.1303819992 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
9 Hb_000022_080 0.1322577439 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
10 Hb_010889_010 0.133492133 - - PREDICTED: myosin-12 [Jatropha curcas]
11 Hb_006693_010 0.1335180538 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
12 Hb_008686_010 0.1345967159 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003813_090 0.1380693393 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
14 Hb_001862_050 0.1385997926 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
15 Hb_003055_090 0.1392150629 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
16 Hb_002639_050 0.1419676592 - - multicopper oxidase, putative [Ricinus communis]
17 Hb_002045_210 0.1435176192 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
18 Hb_010381_100 0.1442037844 - - Phospholipase D epsilon [Morus notabilis]
19 Hb_169893_010 0.1446051344 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
20 Hb_003606_050 0.1457429666 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]

Gene co-expression network

sample Hb_003992_280 Hb_003992_280 Hb_000300_190 Hb_000300_190 Hb_003992_280--Hb_000300_190 Hb_003728_110 Hb_003728_110 Hb_003992_280--Hb_003728_110 Hb_003055_080 Hb_003055_080 Hb_003992_280--Hb_003055_080 Hb_002965_060 Hb_002965_060 Hb_003992_280--Hb_002965_060 Hb_001195_550 Hb_001195_550 Hb_003992_280--Hb_001195_550 Hb_000020_050 Hb_000020_050 Hb_003992_280--Hb_000020_050 Hb_000300_190--Hb_003055_080 Hb_000300_190--Hb_002965_060 Hb_006120_130 Hb_006120_130 Hb_000300_190--Hb_006120_130 Hb_002639_050 Hb_002639_050 Hb_000300_190--Hb_002639_050 Hb_000375_260 Hb_000375_260 Hb_000300_190--Hb_000375_260 Hb_002292_080 Hb_002292_080 Hb_003728_110--Hb_002292_080 Hb_003606_050 Hb_003606_050 Hb_003728_110--Hb_003606_050 Hb_003935_040 Hb_003935_040 Hb_003728_110--Hb_003935_040 Hb_030685_010 Hb_030685_010 Hb_003728_110--Hb_030685_010 Hb_003055_090 Hb_003055_090 Hb_003728_110--Hb_003055_090 Hb_003055_080--Hb_002965_060 Hb_000878_120 Hb_000878_120 Hb_003055_080--Hb_000878_120 Hb_003055_080--Hb_001195_550 Hb_006351_030 Hb_006351_030 Hb_003055_080--Hb_006351_030 Hb_003055_080--Hb_000375_260 Hb_002965_060--Hb_006120_130 Hb_002965_060--Hb_000375_260 Hb_002965_060--Hb_003728_110 Hb_169893_010 Hb_169893_010 Hb_001195_550--Hb_169893_010 Hb_008686_010 Hb_008686_010 Hb_001195_550--Hb_008686_010 Hb_070498_010 Hb_070498_010 Hb_001195_550--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_001195_550--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_001195_550--Hb_001159_090 Hb_001195_550--Hb_002639_050 Hb_001971_040 Hb_001971_040 Hb_000020_050--Hb_001971_040 Hb_006693_010 Hb_006693_010 Hb_000020_050--Hb_006693_010 Hb_000020_050--Hb_003935_040 Hb_000345_230 Hb_000345_230 Hb_000020_050--Hb_000345_230 Hb_001348_100 Hb_001348_100 Hb_000020_050--Hb_001348_100 Hb_001141_440 Hb_001141_440 Hb_000020_050--Hb_001141_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.936515 5.07628 28.4131 34.9181 0.354403 0.370423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08647 0.663956 0.650986 3.01912 5.57336

CAGE analysis