Hb_003994_080

Information

Type -
Description -
Location Contig3994: 79921-85892
Sequence    

Annotation

kegg
ID pop:POPTR_0007s15080g
description POPTRDRAFT_215864; hypothetical protein
nr
ID XP_012072625.1
description PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
swissprot
ID P49534
description Uncharacterized protein ycf39 OS=Odontella sinensis GN=ycf39 PE=3 SV=1
trembl
ID A0A067L132
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06691 PE=4 SV=1
Gene Ontology
ID GO:0009570
description high chlorophyll fluorescence phenotype 173 protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39732: 79917-85685 , PASA_asmbl_39733: 81802-82373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_080 0.0 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
2 Hb_003752_090 0.0709596529 - - chitinase, putative [Ricinus communis]
3 Hb_005000_080 0.0795163761 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
4 Hb_001021_210 0.0798487658 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_138585_030 0.0850962441 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
6 Hb_000025_540 0.087006791 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
7 Hb_010620_050 0.0876897629 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
8 Hb_009288_040 0.0920536129 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
9 Hb_000566_010 0.0923000484 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
10 Hb_032631_070 0.0950583546 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
11 Hb_000069_360 0.0952043408 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005665_090 0.0984977976 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
13 Hb_000579_040 0.100135125 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
14 Hb_002759_120 0.1033532872 - - conserved hypothetical protein [Ricinus communis]
15 Hb_042083_040 0.1048233661 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001307_100 0.104977794 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_000414_080 0.1066453639 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
18 Hb_000094_100 0.1074539999 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
19 Hb_001628_120 0.1099788808 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
20 Hb_002374_450 0.1107594545 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003994_080 Hb_003994_080 Hb_003752_090 Hb_003752_090 Hb_003994_080--Hb_003752_090 Hb_005000_080 Hb_005000_080 Hb_003994_080--Hb_005000_080 Hb_001021_210 Hb_001021_210 Hb_003994_080--Hb_001021_210 Hb_138585_030 Hb_138585_030 Hb_003994_080--Hb_138585_030 Hb_000025_540 Hb_000025_540 Hb_003994_080--Hb_000025_540 Hb_010620_050 Hb_010620_050 Hb_003994_080--Hb_010620_050 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_002759_120 Hb_002759_120 Hb_003752_090--Hb_002759_120 Hb_001649_030 Hb_001649_030 Hb_003752_090--Hb_001649_030 Hb_000208_190 Hb_000208_190 Hb_005000_080--Hb_000208_190 Hb_005000_080--Hb_138585_030 Hb_000188_060 Hb_000188_060 Hb_005000_080--Hb_000188_060 Hb_000235_070 Hb_000235_070 Hb_005000_080--Hb_000235_070 Hb_005000_080--Hb_001021_210 Hb_001021_210--Hb_010620_050 Hb_001021_210--Hb_003752_090 Hb_002107_050 Hb_002107_050 Hb_001021_210--Hb_002107_050 Hb_007594_080 Hb_007594_080 Hb_001021_210--Hb_007594_080 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_002783_190 Hb_002783_190 Hb_000025_540--Hb_002783_190 Hb_000025_540--Hb_138585_030 Hb_002627_040 Hb_002627_040 Hb_000025_540--Hb_002627_040 Hb_014497_010 Hb_014497_010 Hb_000025_540--Hb_014497_010 Hb_002687_160 Hb_002687_160 Hb_000025_540--Hb_002687_160 Hb_010620_050--Hb_002107_050 Hb_012779_080 Hb_012779_080 Hb_010620_050--Hb_012779_080 Hb_003071_030 Hb_003071_030 Hb_010620_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_010620_050--Hb_160271_010 Hb_010620_050--Hb_009288_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.04217 22.7035 65.2633 49.7859 8.42829 11.1883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1539 13.3825 15.2925 14.1517 69.9449

CAGE analysis