Hb_003994_100

Information

Type transcription factor
Description TF Family: PHD
Location Contig3994: 117784-133936
Sequence    

Annotation

kegg
ID rcu:RCOM_1573230
description transcription cofactor, putative
nr
ID XP_012087277.1
description PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
swissprot
ID Q9FWQ5
description Histone acetyltransferase HAC12 OS=Arabidopsis thaliana GN=HAC12 PE=2 SV=2
trembl
ID B9RHR9
description Transcription cofactor, putative OS=Ricinus communis GN=RCOM_1573230 PE=4 SV=1
Gene Ontology
ID GO:0003712
description histone acetyltransferase hac1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39734: 130304-130436 , PASA_asmbl_39735: 130664-131515 , PASA_asmbl_39736: 131837-133631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_100 0.0 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
2 Hb_000080_170 0.0743595114 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
3 Hb_005539_090 0.0770460215 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
4 Hb_000345_150 0.0796289305 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
5 Hb_000012_140 0.0863012231 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006663_040 0.0873235437 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
7 Hb_052764_060 0.0897957396 - - XPA-binding protein, putative [Ricinus communis]
8 Hb_007813_030 0.0939887059 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
9 Hb_006787_060 0.0963644865 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
10 Hb_015475_020 0.0967063195 - - importin beta-1, putative [Ricinus communis]
11 Hb_004884_010 0.0967107841 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
12 Hb_002022_070 0.0968290094 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
13 Hb_001231_030 0.1014328964 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
14 Hb_004543_030 0.1017004805 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
15 Hb_000832_320 0.1017123162 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
16 Hb_034243_020 0.1022037939 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
17 Hb_133047_010 0.1027647079 - - xanthine dehydrogenase, putative [Ricinus communis]
18 Hb_018133_050 0.102961989 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
19 Hb_000406_020 0.1030251922 - - -
20 Hb_005214_150 0.1037411329 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_100 Hb_003994_100 Hb_000080_170 Hb_000080_170 Hb_003994_100--Hb_000080_170 Hb_005539_090 Hb_005539_090 Hb_003994_100--Hb_005539_090 Hb_000345_150 Hb_000345_150 Hb_003994_100--Hb_000345_150 Hb_000012_140 Hb_000012_140 Hb_003994_100--Hb_000012_140 Hb_006663_040 Hb_006663_040 Hb_003994_100--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_003994_100--Hb_052764_060 Hb_000832_320 Hb_000832_320 Hb_000080_170--Hb_000832_320 Hb_000080_170--Hb_006663_040 Hb_004543_030 Hb_004543_030 Hb_000080_170--Hb_004543_030 Hb_018133_050 Hb_018133_050 Hb_000080_170--Hb_018133_050 Hb_015475_020 Hb_015475_020 Hb_000080_170--Hb_015475_020 Hb_005539_090--Hb_000012_140 Hb_007576_120 Hb_007576_120 Hb_005539_090--Hb_007576_120 Hb_004483_040 Hb_004483_040 Hb_005539_090--Hb_004483_040 Hb_000977_120 Hb_000977_120 Hb_005539_090--Hb_000977_120 Hb_000321_150 Hb_000321_150 Hb_005539_090--Hb_000321_150 Hb_000960_100 Hb_000960_100 Hb_005539_090--Hb_000960_100 Hb_002022_070 Hb_002022_070 Hb_000345_150--Hb_002022_070 Hb_005104_010 Hb_005104_010 Hb_000345_150--Hb_005104_010 Hb_000786_040 Hb_000786_040 Hb_000345_150--Hb_000786_040 Hb_004629_010 Hb_004629_010 Hb_000345_150--Hb_004629_010 Hb_000345_150--Hb_005539_090 Hb_034243_020 Hb_034243_020 Hb_000345_150--Hb_034243_020 Hb_000012_140--Hb_007576_120 Hb_001143_250 Hb_001143_250 Hb_000012_140--Hb_001143_250 Hb_000012_140--Hb_002022_070 Hb_000012_140--Hb_034243_020 Hb_000012_140--Hb_004543_030 Hb_006663_040--Hb_052764_060 Hb_006663_040--Hb_000832_320 Hb_006663_040--Hb_018133_050 Hb_000189_100 Hb_000189_100 Hb_006663_040--Hb_000189_100 Hb_157966_010 Hb_157966_010 Hb_006663_040--Hb_157966_010 Hb_000544_060 Hb_000544_060 Hb_006663_040--Hb_000544_060 Hb_000661_200 Hb_000661_200 Hb_052764_060--Hb_000661_200 Hb_052764_060--Hb_000544_060 Hb_052764_060--Hb_018133_050 Hb_052764_060--Hb_000832_320 Hb_004480_040 Hb_004480_040 Hb_052764_060--Hb_004480_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7124 21.548 5.68211 4.51327 13.8686 12.7171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0911 2.78094 6.17666 7.00552 13.2325

CAGE analysis