Hb_003994_110

Information

Type transcription factor
Description TF Family: mTERF
Location Contig3994: 154095-158969
Sequence    

Annotation

kegg
ID rcu:RCOM_1573480
description hypothetical protein
nr
ID XP_012087301.1
description PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JM18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22571 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39737: 154563-154689 , PASA_asmbl_39738: 155500-155801 , PASA_asmbl_39739: 155940-156738 , PASA_asmbl_39740: 157138-157304 , PASA_asmbl_39741: 157942-161257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_110 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
2 Hb_003544_010 0.0760515693 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_003475_020 0.0816521116 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
4 Hb_000613_110 0.0826839088 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
5 Hb_032920_050 0.0832879228 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
6 Hb_001824_090 0.0835064126 - - -
7 Hb_003106_190 0.0841416574 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
8 Hb_036790_080 0.0922669351 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
9 Hb_007101_080 0.096835074 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
10 Hb_007922_020 0.0979257944 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
11 Hb_003467_030 0.1006711776 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_000130_320 0.1013329092 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
13 Hb_005253_030 0.1020580272 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_002078_340 0.1036813675 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
15 Hb_000261_060 0.1037308402 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
16 Hb_002811_010 0.1059943189 - - cysteine synthase, putative [Ricinus communis]
17 Hb_001435_030 0.1070434982 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
18 Hb_000479_250 0.1079694235 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
19 Hb_006274_050 0.1093416398 - - hypothetical protein VITISV_022618 [Vitis vinifera]
20 Hb_005731_160 0.1100663495 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_003994_110 Hb_003994_110 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_003994_110--Hb_003475_020 Hb_000613_110 Hb_000613_110 Hb_003994_110--Hb_000613_110 Hb_032920_050 Hb_032920_050 Hb_003994_110--Hb_032920_050 Hb_001824_090 Hb_001824_090 Hb_003994_110--Hb_001824_090 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190 Hb_011386_020 Hb_011386_020 Hb_003544_010--Hb_011386_020 Hb_005282_020 Hb_005282_020 Hb_003544_010--Hb_005282_020 Hb_003544_010--Hb_001824_090 Hb_000012_160 Hb_000012_160 Hb_003544_010--Hb_000012_160 Hb_003544_010--Hb_003475_020 Hb_001790_080 Hb_001790_080 Hb_003475_020--Hb_001790_080 Hb_000676_200 Hb_000676_200 Hb_003475_020--Hb_000676_200 Hb_000130_320 Hb_000130_320 Hb_003475_020--Hb_000130_320 Hb_002232_390 Hb_002232_390 Hb_003475_020--Hb_002232_390 Hb_002282_070 Hb_002282_070 Hb_003475_020--Hb_002282_070 Hb_005731_160 Hb_005731_160 Hb_000613_110--Hb_005731_160 Hb_002811_010 Hb_002811_010 Hb_000613_110--Hb_002811_010 Hb_000613_110--Hb_032920_050 Hb_001449_070 Hb_001449_070 Hb_000613_110--Hb_001449_070 Hb_000613_110--Hb_003106_190 Hb_036790_080 Hb_036790_080 Hb_032920_050--Hb_036790_080 Hb_032920_050--Hb_000130_320 Hb_000479_250 Hb_000479_250 Hb_032920_050--Hb_000479_250 Hb_007101_080 Hb_007101_080 Hb_032920_050--Hb_007101_080 Hb_001824_090--Hb_000613_110 Hb_001824_090--Hb_007101_080 Hb_002078_340 Hb_002078_340 Hb_001824_090--Hb_002078_340 Hb_003376_230 Hb_003376_230 Hb_001824_090--Hb_003376_230 Hb_000077_150 Hb_000077_150 Hb_001824_090--Hb_000077_150 Hb_003106_190--Hb_002811_010 Hb_000359_210 Hb_000359_210 Hb_003106_190--Hb_000359_210 Hb_000684_210 Hb_000684_210 Hb_003106_190--Hb_000684_210 Hb_003106_190--Hb_000077_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65743 2.09128 2.79967 3.96733 3.16796 4.39817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85397 3.9492 4.38045 4.46773 12.5215

CAGE analysis