Hb_003994_130

Information

Type -
Description -
Location Contig3994: 162281-164606
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04300g
description POPTRDRAFT_758903; hypothetical protein
nr
ID XP_012087302.1
description PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Jatropha curcas]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID B9H2V5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04300g PE=4 SV=2
Gene Ontology
ID GO:0005618
description multiple c2 and transmembrane domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_130 0.0 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Jatropha curcas]
2 Hb_000088_190 0.1791821794 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001511_050 0.1867060073 - - PREDICTED: probable inactive serine/threonine-protein kinase bub1 isoform X1 [Jatropha curcas]
4 Hb_004100_050 0.1899833549 - - PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]
5 Hb_000739_240 0.1976622486 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
6 Hb_171900_040 0.199381512 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
7 Hb_006905_030 0.2001624931 - - -
8 Hb_002055_020 0.2057159984 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
9 Hb_003363_070 0.2097310475 - - -
10 Hb_000003_710 0.2104479838 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
11 Hb_005601_020 0.2110029484 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
12 Hb_167103_010 0.2111002081 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
13 Hb_001975_090 0.2116414956 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
14 Hb_000025_030 0.2132992683 - - transcription factor, putative [Ricinus communis]
15 Hb_067402_010 0.2135794982 - - hypothetical protein CISIN_1g0029712mg, partial [Citrus sinensis]
16 Hb_000757_030 0.2136922154 - - radical sam protein, putative [Ricinus communis]
17 Hb_010931_070 0.2152194626 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
18 Hb_002498_140 0.2155082513 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
19 Hb_075751_010 0.217032106 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
20 Hb_010422_010 0.2170762934 - - phosphofructokinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_003994_130 Hb_003994_130 Hb_000088_190 Hb_000088_190 Hb_003994_130--Hb_000088_190 Hb_001511_050 Hb_001511_050 Hb_003994_130--Hb_001511_050 Hb_004100_050 Hb_004100_050 Hb_003994_130--Hb_004100_050 Hb_000739_240 Hb_000739_240 Hb_003994_130--Hb_000739_240 Hb_171900_040 Hb_171900_040 Hb_003994_130--Hb_171900_040 Hb_006905_030 Hb_006905_030 Hb_003994_130--Hb_006905_030 Hb_000088_190--Hb_171900_040 Hb_000757_030 Hb_000757_030 Hb_000088_190--Hb_000757_030 Hb_010931_070 Hb_010931_070 Hb_000088_190--Hb_010931_070 Hb_003363_070 Hb_003363_070 Hb_000088_190--Hb_003363_070 Hb_002498_140 Hb_002498_140 Hb_000088_190--Hb_002498_140 Hb_000046_040 Hb_000046_040 Hb_000088_190--Hb_000046_040 Hb_001348_170 Hb_001348_170 Hb_001511_050--Hb_001348_170 Hb_002028_150 Hb_002028_150 Hb_001511_050--Hb_002028_150 Hb_001511_050--Hb_000088_190 Hb_002026_170 Hb_002026_170 Hb_001511_050--Hb_002026_170 Hb_004837_270 Hb_004837_270 Hb_001511_050--Hb_004837_270 Hb_001205_120 Hb_001205_120 Hb_001511_050--Hb_001205_120 Hb_000880_070 Hb_000880_070 Hb_004100_050--Hb_000880_070 Hb_001703_040 Hb_001703_040 Hb_004100_050--Hb_001703_040 Hb_002716_060 Hb_002716_060 Hb_004100_050--Hb_002716_060 Hb_001025_120 Hb_001025_120 Hb_004100_050--Hb_001025_120 Hb_089839_010 Hb_089839_010 Hb_004100_050--Hb_089839_010 Hb_000260_460 Hb_000260_460 Hb_004100_050--Hb_000260_460 Hb_000579_080 Hb_000579_080 Hb_000739_240--Hb_000579_080 Hb_008206_080 Hb_008206_080 Hb_000739_240--Hb_008206_080 Hb_159809_070 Hb_159809_070 Hb_000739_240--Hb_159809_070 Hb_000229_050 Hb_000229_050 Hb_000739_240--Hb_000229_050 Hb_004228_120 Hb_004228_120 Hb_000739_240--Hb_004228_120 Hb_000724_020 Hb_000724_020 Hb_000739_240--Hb_000724_020 Hb_171900_040--Hb_010931_070 Hb_171900_040--Hb_000757_030 Hb_007821_020 Hb_007821_020 Hb_171900_040--Hb_007821_020 Hb_001824_080 Hb_001824_080 Hb_171900_040--Hb_001824_080 Hb_171900_040--Hb_002498_140 Hb_006573_150 Hb_006573_150 Hb_006905_030--Hb_006573_150 Hb_005601_020 Hb_005601_020 Hb_006905_030--Hb_005601_020 Hb_001981_040 Hb_001981_040 Hb_006905_030--Hb_001981_040 Hb_167103_010 Hb_167103_010 Hb_006905_030--Hb_167103_010 Hb_000062_510 Hb_000062_510 Hb_006905_030--Hb_000062_510 Hb_114893_040 Hb_114893_040 Hb_006905_030--Hb_114893_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0946616 0.0179803 0.104869 0.0385062 0.0606167 0.00864476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0206028 0.0324228 0.0924213 0.0837822 0.0686799

CAGE analysis