Hb_003994_190

Information

Type -
Description -
Location Contig3994: 196686-201053
Sequence    

Annotation

kegg
ID rcu:RCOM_1573700
description hypothetical protein
nr
ID XP_002513315.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RHU6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1573700 PE=4 SV=1
Gene Ontology
ID GO:0005840
description gb: isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39756: 197242-197795 , PASA_asmbl_39757: 200301-200435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000111_450 0.0958062048 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
3 Hb_001279_340 0.0979477479 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
4 Hb_005928_100 0.1071071052 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
5 Hb_000130_110 0.1088539584 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
6 Hb_000340_310 0.1120306672 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
7 Hb_002043_050 0.1121612632 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
8 Hb_002660_070 0.1174329873 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
9 Hb_001096_110 0.1188477995 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
10 Hb_003540_030 0.1192873924 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
11 Hb_000108_070 0.1194400381 - - alpha-tubulin 1 [Hevea brasiliensis]
12 Hb_003581_260 0.1206423625 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
13 Hb_002239_060 0.1217991616 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
14 Hb_010407_180 0.1235622205 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
15 Hb_002284_200 0.1244954417 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
16 Hb_001545_100 0.1248317558 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
17 Hb_189216_030 0.1258173808 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
18 Hb_001195_360 0.1266517494 - - PREDICTED: random slug protein 5 [Jatropha curcas]
19 Hb_000120_960 0.1275092628 - - isocitrate dehydrogenase, putative [Ricinus communis]
20 Hb_001159_080 0.1299995667 - - hypothetical protein JCGZ_20745 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_190 Hb_003994_190 Hb_000111_450 Hb_000111_450 Hb_003994_190--Hb_000111_450 Hb_001279_340 Hb_001279_340 Hb_003994_190--Hb_001279_340 Hb_005928_100 Hb_005928_100 Hb_003994_190--Hb_005928_100 Hb_000130_110 Hb_000130_110 Hb_003994_190--Hb_000130_110 Hb_000340_310 Hb_000340_310 Hb_003994_190--Hb_000340_310 Hb_002043_050 Hb_002043_050 Hb_003994_190--Hb_002043_050 Hb_013405_140 Hb_013405_140 Hb_000111_450--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_000111_450--Hb_011485_020 Hb_002284_200 Hb_002284_200 Hb_000111_450--Hb_002284_200 Hb_000479_160 Hb_000479_160 Hb_000111_450--Hb_000479_160 Hb_001776_160 Hb_001776_160 Hb_000111_450--Hb_001776_160 Hb_006831_120 Hb_006831_120 Hb_001279_340--Hb_006831_120 Hb_002660_070 Hb_002660_070 Hb_001279_340--Hb_002660_070 Hb_000120_960 Hb_000120_960 Hb_001279_340--Hb_000120_960 Hb_001279_340--Hb_002284_200 Hb_010407_180 Hb_010407_180 Hb_001279_340--Hb_010407_180 Hb_001545_100 Hb_001545_100 Hb_001279_340--Hb_001545_100 Hb_005928_100--Hb_002043_050 Hb_005928_100--Hb_000111_450 Hb_005928_100--Hb_010407_180 Hb_005928_100--Hb_002284_200 Hb_005928_100--Hb_000120_960 Hb_001195_360 Hb_001195_360 Hb_000130_110--Hb_001195_360 Hb_000130_110--Hb_000340_310 Hb_000130_110--Hb_000111_450 Hb_000130_110--Hb_005928_100 Hb_002239_060 Hb_002239_060 Hb_000130_110--Hb_002239_060 Hb_000340_310--Hb_000111_450 Hb_001096_110 Hb_001096_110 Hb_000340_310--Hb_001096_110 Hb_000340_310--Hb_013405_140 Hb_002026_120 Hb_002026_120 Hb_000340_310--Hb_002026_120 Hb_002043_050--Hb_000120_960 Hb_002043_050--Hb_001279_340 Hb_002043_050--Hb_010407_180 Hb_000155_200 Hb_000155_200 Hb_002043_050--Hb_000155_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74738 1.10682 3.19386 2.35719 1.29667 1.37923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08093 5.99436 10.2615 2.66132 1.36626

CAGE analysis