Hb_003994_210

Information

Type -
Description -
Location Contig3994: 207644-209265
Sequence    

Annotation

kegg
ID rcu:RCOM_1573730
description zinc finger protein, putative
nr
ID XP_002513318.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9C7N4
description GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1
trembl
ID B9RHU9
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1573730 PE=4 SV=1
Gene Ontology
ID GO:0016491
description gdsl esterase lipase at1g29670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_210 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000844_120 0.0005835351 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
3 Hb_004447_040 0.0014867845 - - cyclin d, putative [Ricinus communis]
4 Hb_014109_030 0.003293792 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
5 Hb_000500_380 0.0119767126 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
6 Hb_004744_030 0.0126466241 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_046150_010 0.0155169069 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
8 Hb_002186_150 0.0155504156 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
9 Hb_011846_020 0.01735662 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
10 Hb_002837_010 0.0229633594 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
11 Hb_007816_010 0.0278816907 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
12 Hb_012573_060 0.0320002912 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
13 Hb_013849_010 0.0338429448 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
14 Hb_002585_050 0.035606971 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000680_080 0.0359172502 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
16 Hb_022929_010 0.0364079624 - - zinc/iron transporter, putative [Ricinus communis]
17 Hb_002030_140 0.037852312 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
18 Hb_021622_010 0.0398551004 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
19 Hb_001546_100 0.0438991063 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
20 Hb_000592_150 0.0446150684 - - Os05g0413200 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_003994_210 Hb_003994_210 Hb_000844_120 Hb_000844_120 Hb_003994_210--Hb_000844_120 Hb_004447_040 Hb_004447_040 Hb_003994_210--Hb_004447_040 Hb_014109_030 Hb_014109_030 Hb_003994_210--Hb_014109_030 Hb_000500_380 Hb_000500_380 Hb_003994_210--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_003994_210--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_003994_210--Hb_046150_010 Hb_000844_120--Hb_004447_040 Hb_000844_120--Hb_014109_030 Hb_000844_120--Hb_000500_380 Hb_000844_120--Hb_004744_030 Hb_000844_120--Hb_046150_010 Hb_004447_040--Hb_014109_030 Hb_004447_040--Hb_000500_380 Hb_004447_040--Hb_004744_030 Hb_004447_040--Hb_046150_010 Hb_014109_030--Hb_000500_380 Hb_014109_030--Hb_004744_030 Hb_014109_030--Hb_046150_010 Hb_000500_380--Hb_004744_030 Hb_000500_380--Hb_046150_010 Hb_002186_150 Hb_002186_150 Hb_000500_380--Hb_002186_150 Hb_011846_020 Hb_011846_020 Hb_000500_380--Hb_011846_020 Hb_002837_010 Hb_002837_010 Hb_000500_380--Hb_002837_010 Hb_004744_030--Hb_046150_010 Hb_004744_030--Hb_002186_150 Hb_004744_030--Hb_011846_020 Hb_004744_030--Hb_002837_010 Hb_046150_010--Hb_002186_150 Hb_046150_010--Hb_011846_020 Hb_046150_010--Hb_002837_010 Hb_007816_010 Hb_007816_010 Hb_046150_010--Hb_007816_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.51538 0.0485209 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis