Hb_003994_220

Information

Type -
Description -
Location Contig3994: 213679-221093
Sequence    

Annotation

kegg
ID pop:POPTR_0008s00560g
description POPTRDRAFT_719941; Vacuolar ATP synthase catalytic subunit A family protein
nr
ID XP_012087323.1
description PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
swissprot
ID Q9SM09
description V-type proton ATPase catalytic subunit A OS=Citrus unshiu PE=2 SV=1
trembl
ID A0A067JM34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22586 PE=3 SV=1
Gene Ontology
ID GO:0033180
description v-type proton atpase catalytic subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39761: 213732-221009 , PASA_asmbl_39762: 218636-218777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_220 0.0 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
2 Hb_003038_040 0.0573457455 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
3 Hb_001703_050 0.0640536441 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_031527_080 0.0641197108 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
5 Hb_003097_140 0.0677481082 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
6 Hb_007416_210 0.0779769247 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
7 Hb_001021_010 0.0796384122 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
8 Hb_000701_030 0.0836456776 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
9 Hb_001369_360 0.0842224639 - - embryo yellow protein, partial [Manihot esculenta]
10 Hb_027445_020 0.0868192891 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
11 Hb_001587_030 0.0871653057 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
12 Hb_001097_040 0.0871992794 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
13 Hb_001226_130 0.0874714575 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
14 Hb_003998_040 0.0899845408 - - organic anion transporter, putative [Ricinus communis]
15 Hb_000161_210 0.0901319238 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
16 Hb_065500_020 0.0903006002 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
17 Hb_000649_060 0.0914530571 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
18 Hb_000237_040 0.0933996306 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
19 Hb_001821_150 0.0938554602 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
20 Hb_030982_010 0.0940624486 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003994_220 Hb_003994_220 Hb_003038_040 Hb_003038_040 Hb_003994_220--Hb_003038_040 Hb_001703_050 Hb_001703_050 Hb_003994_220--Hb_001703_050 Hb_031527_080 Hb_031527_080 Hb_003994_220--Hb_031527_080 Hb_003097_140 Hb_003097_140 Hb_003994_220--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_003994_220--Hb_007416_210 Hb_001021_010 Hb_001021_010 Hb_003994_220--Hb_001021_010 Hb_000161_210 Hb_000161_210 Hb_003038_040--Hb_000161_210 Hb_001097_040 Hb_001097_040 Hb_003038_040--Hb_001097_040 Hb_065500_020 Hb_065500_020 Hb_003038_040--Hb_065500_020 Hb_001159_030 Hb_001159_030 Hb_003038_040--Hb_001159_030 Hb_010042_030 Hb_010042_030 Hb_003038_040--Hb_010042_030 Hb_001269_600 Hb_001269_600 Hb_001703_050--Hb_001269_600 Hb_001703_050--Hb_065500_020 Hb_011214_160 Hb_011214_160 Hb_001703_050--Hb_011214_160 Hb_000352_300 Hb_000352_300 Hb_001703_050--Hb_000352_300 Hb_000184_070 Hb_000184_070 Hb_001703_050--Hb_000184_070 Hb_031527_080--Hb_003038_040 Hb_031527_080--Hb_001021_010 Hb_000009_060 Hb_000009_060 Hb_031527_080--Hb_000009_060 Hb_031527_080--Hb_001097_040 Hb_002686_200 Hb_002686_200 Hb_031527_080--Hb_002686_200 Hb_001440_020 Hb_001440_020 Hb_003097_140--Hb_001440_020 Hb_007765_040 Hb_007765_040 Hb_003097_140--Hb_007765_040 Hb_000477_100 Hb_000477_100 Hb_003097_140--Hb_000477_100 Hb_000390_050 Hb_000390_050 Hb_003097_140--Hb_000390_050 Hb_027445_020 Hb_027445_020 Hb_003097_140--Hb_027445_020 Hb_007416_210--Hb_000390_050 Hb_007416_210--Hb_003097_140 Hb_043792_040 Hb_043792_040 Hb_007416_210--Hb_043792_040 Hb_007416_210--Hb_007765_040 Hb_003340_010 Hb_003340_010 Hb_007416_210--Hb_003340_010 Hb_001021_010--Hb_000009_060 Hb_000389_030 Hb_000389_030 Hb_001021_010--Hb_000389_030 Hb_001021_010--Hb_001097_040 Hb_000703_330 Hb_000703_330 Hb_001021_010--Hb_000703_330 Hb_004525_040 Hb_004525_040 Hb_001021_010--Hb_004525_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1977 18.9098 27.0323 54.9289 17.4282 20.2355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8194 10.023 22.9346 41.3414 32.725

CAGE analysis