Hb_003994_230

Information

Type -
Description -
Location Contig3994: 221317-231346
Sequence    

Annotation

kegg
ID rcu:RCOM_1573850
description 7-dehydrocholesterol reductase, putative (EC:1.3.1.21)
nr
ID XP_002513320.1
description 7-dehydrocholesterol reductase, putative [Ricinus communis]
swissprot
ID Q9LDU6
description 7-dehydrocholesterol reductase OS=Arabidopsis thaliana GN=DWF5 PE=1 SV=1
trembl
ID B9RHV1
description 7-dehydrocholesterol reductase, putative OS=Ricinus communis GN=RCOM_1573850 PE=4 SV=1
Gene Ontology
ID GO:0005794
description 7-dehydrocholesterol reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39763: 221225-222872 , PASA_asmbl_39764: 221225-223078 , PASA_asmbl_39765: 224268-230429 , PASA_asmbl_39766: 224268-230429 , PASA_asmbl_39767: 224271-230452 , PASA_asmbl_39768: 226536-226714 , PASA_asmbl_39769: 230009-230114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_230 0.0 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
2 Hb_000948_230 0.0568337998 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_000720_040 0.0588005715 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
4 Hb_001318_280 0.0612932379 - - Protein FAM18B, putative [Ricinus communis]
5 Hb_001511_060 0.0645216276 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
6 Hb_002936_010 0.0651687081 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
7 Hb_001427_160 0.0667740543 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_000050_200 0.0682064709 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
9 Hb_008616_050 0.0725895394 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
10 Hb_002681_100 0.0736342654 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
11 Hb_002641_060 0.0738298705 - - prefoldin subunit, putative [Ricinus communis]
12 Hb_003528_030 0.0742614595 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
13 Hb_014834_050 0.0751357843 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000025_180 0.0755012421 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
15 Hb_005271_040 0.0769725555 - - PREDICTED: serine racemase [Jatropha curcas]
16 Hb_000260_350 0.0777374867 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001366_370 0.0779869089 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
18 Hb_004990_010 0.0783552576 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
19 Hb_023732_030 0.0784579063 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
20 Hb_172632_100 0.0791033445 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_230 Hb_003994_230 Hb_000948_230 Hb_000948_230 Hb_003994_230--Hb_000948_230 Hb_000720_040 Hb_000720_040 Hb_003994_230--Hb_000720_040 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_001511_060 Hb_001511_060 Hb_003994_230--Hb_001511_060 Hb_002936_010 Hb_002936_010 Hb_003994_230--Hb_002936_010 Hb_001427_160 Hb_001427_160 Hb_003994_230--Hb_001427_160 Hb_013575_010 Hb_013575_010 Hb_000948_230--Hb_013575_010 Hb_003057_060 Hb_003057_060 Hb_000948_230--Hb_003057_060 Hb_004990_010 Hb_004990_010 Hb_000948_230--Hb_004990_010 Hb_000948_230--Hb_000720_040 Hb_000948_230--Hb_001511_060 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_000720_040--Hb_002936_010 Hb_000783_010 Hb_000783_010 Hb_000720_040--Hb_000783_010 Hb_172632_100 Hb_172632_100 Hb_001318_280--Hb_172632_100 Hb_008616_050 Hb_008616_050 Hb_001318_280--Hb_008616_050 Hb_000081_160 Hb_000081_160 Hb_001318_280--Hb_000081_160 Hb_002553_060 Hb_002553_060 Hb_001318_280--Hb_002553_060 Hb_002641_060 Hb_002641_060 Hb_001318_280--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_001511_060--Hb_000260_350 Hb_168978_010 Hb_168978_010 Hb_001511_060--Hb_168978_010 Hb_022115_020 Hb_022115_020 Hb_001511_060--Hb_022115_020 Hb_000349_260 Hb_000349_260 Hb_001511_060--Hb_000349_260 Hb_000359_060 Hb_000359_060 Hb_001511_060--Hb_000359_060 Hb_024958_010 Hb_024958_010 Hb_002936_010--Hb_024958_010 Hb_006570_080 Hb_006570_080 Hb_002936_010--Hb_006570_080 Hb_001359_050 Hb_001359_050 Hb_002936_010--Hb_001359_050 Hb_005588_060 Hb_005588_060 Hb_002936_010--Hb_005588_060 Hb_009787_030 Hb_009787_030 Hb_001427_160--Hb_009787_030 Hb_002053_140 Hb_002053_140 Hb_001427_160--Hb_002053_140 Hb_000510_300 Hb_000510_300 Hb_001427_160--Hb_000510_300 Hb_001366_370 Hb_001366_370 Hb_001427_160--Hb_001366_370 Hb_001703_060 Hb_001703_060 Hb_001427_160--Hb_001703_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6268 19.8269 34.1142 46.2641 35.0989 27.5458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.5253 39.1588 31.3625 37.4308 19.9262

CAGE analysis