Hb_003994_260

Information

Type -
Description -
Location Contig3994: 251212-253886
Sequence    

Annotation

kegg
ID rcu:RCOM_1573890
description hypothetical protein
nr
ID XP_012087338.1
description PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39774: 251292-253942 , PASA_asmbl_39775: 251726-252382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_260 0.0 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
2 Hb_000069_420 0.0579694359 - - Beclin-1, putative [Ricinus communis]
3 Hb_000483_260 0.0682942101 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
4 Hb_000258_260 0.0701427575 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
5 Hb_010812_120 0.0708818276 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
6 Hb_004324_090 0.0732514938 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
7 Hb_000603_080 0.0761469435 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
8 Hb_089032_030 0.0780548217 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
9 Hb_001545_170 0.0783878046 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
10 Hb_034406_030 0.0788683686 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
11 Hb_001633_210 0.0789897607 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
12 Hb_001314_070 0.0792724653 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000460_030 0.0799528624 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
14 Hb_008173_110 0.080959969 - - DNA binding protein, putative [Ricinus communis]
15 Hb_003349_090 0.0839522712 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
16 Hb_001195_200 0.0854085996 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
17 Hb_000982_080 0.0859911993 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
18 Hb_163256_020 0.0861270311 - - fructokinase [Manihot esculenta]
19 Hb_000250_060 0.0862951288 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
20 Hb_000049_210 0.0868572497 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_260 Hb_003994_260 Hb_000069_420 Hb_000069_420 Hb_003994_260--Hb_000069_420 Hb_000483_260 Hb_000483_260 Hb_003994_260--Hb_000483_260 Hb_000258_260 Hb_000258_260 Hb_003994_260--Hb_000258_260 Hb_010812_120 Hb_010812_120 Hb_003994_260--Hb_010812_120 Hb_004324_090 Hb_004324_090 Hb_003994_260--Hb_004324_090 Hb_000603_080 Hb_000603_080 Hb_003994_260--Hb_000603_080 Hb_004994_140 Hb_004994_140 Hb_000069_420--Hb_004994_140 Hb_000069_420--Hb_004324_090 Hb_005846_040 Hb_005846_040 Hb_000069_420--Hb_005846_040 Hb_000250_060 Hb_000250_060 Hb_000069_420--Hb_000250_060 Hb_001633_210 Hb_001633_210 Hb_000069_420--Hb_001633_210 Hb_000460_030 Hb_000460_030 Hb_000483_260--Hb_000460_030 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_001218_030 Hb_001218_030 Hb_000483_260--Hb_001218_030 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_001314_070 Hb_001314_070 Hb_000483_260--Hb_001314_070 Hb_001195_200 Hb_001195_200 Hb_000258_260--Hb_001195_200 Hb_012490_070 Hb_012490_070 Hb_000258_260--Hb_012490_070 Hb_000258_260--Hb_000069_420 Hb_000982_080 Hb_000982_080 Hb_000258_260--Hb_000982_080 Hb_034406_030 Hb_034406_030 Hb_000258_260--Hb_034406_030 Hb_003349_090 Hb_003349_090 Hb_010812_120--Hb_003349_090 Hb_010812_120--Hb_001633_210 Hb_089032_030 Hb_089032_030 Hb_010812_120--Hb_089032_030 Hb_010812_120--Hb_000250_060 Hb_000016_160 Hb_000016_160 Hb_010812_120--Hb_000016_160 Hb_158445_010 Hb_158445_010 Hb_004324_090--Hb_158445_010 Hb_000310_020 Hb_000310_020 Hb_004324_090--Hb_000310_020 Hb_163256_020 Hb_163256_020 Hb_004324_090--Hb_163256_020 Hb_006615_240 Hb_006615_240 Hb_004324_090--Hb_006615_240 Hb_000856_010 Hb_000856_010 Hb_004324_090--Hb_000856_010 Hb_009803_050 Hb_009803_050 Hb_000603_080--Hb_009803_050 Hb_000603_080--Hb_001314_070 Hb_005488_200 Hb_005488_200 Hb_000603_080--Hb_005488_200 Hb_001504_330 Hb_001504_330 Hb_000603_080--Hb_001504_330 Hb_000603_080--Hb_000982_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.0251 47.2816 37.3757 51.6674 27.5896 29.5109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.9591 93.6112 76.038 68.6712 36.601

CAGE analysis