Hb_003994_270

Information

Type -
Description -
Location Contig3994: 254791-255355
Sequence    

Annotation

kegg
ID cit:102622992
description uncharacterized LOC102622992
nr
ID XP_012087339.1
description PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JM40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22591 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39777: 255263-255562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_270 0.0 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
2 Hb_001377_180 0.1110374644 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
3 Hb_000641_020 0.1142472792 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
4 Hb_000155_180 0.1160626853 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
5 Hb_000215_200 0.1181851564 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
6 Hb_012653_040 0.1216131397 - - UV-induced protein uvi31, putative [Ricinus communis]
7 Hb_000771_100 0.1234653906 - - Os06g0527300 [Oryza sativa Japonica Group]
8 Hb_031089_040 0.1284410573 - - thioredoxin H-type 1 [Hevea brasiliensis]
9 Hb_004784_020 0.131351238 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
10 Hb_010180_010 0.1322732136 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
11 Hb_000416_070 0.1394782965 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
12 Hb_006909_030 0.1413199371 - - 40S ribosomal protein S17B [Hevea brasiliensis]
13 Hb_041205_010 0.1427969825 - - conserved hypothetical protein [Ricinus communis]
14 Hb_078185_010 0.1435573701 - - -
15 Hb_006995_040 0.1442124196 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
16 Hb_003861_040 0.1451638359 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
17 Hb_001998_230 0.1457127113 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
18 Hb_000347_340 0.1466042342 - - ring finger, putative [Ricinus communis]
19 Hb_000326_090 0.1469253817 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
20 Hb_004306_020 0.1475749673 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_270 Hb_003994_270 Hb_001377_180 Hb_001377_180 Hb_003994_270--Hb_001377_180 Hb_000641_020 Hb_000641_020 Hb_003994_270--Hb_000641_020 Hb_000155_180 Hb_000155_180 Hb_003994_270--Hb_000155_180 Hb_000215_200 Hb_000215_200 Hb_003994_270--Hb_000215_200 Hb_012653_040 Hb_012653_040 Hb_003994_270--Hb_012653_040 Hb_000771_100 Hb_000771_100 Hb_003994_270--Hb_000771_100 Hb_001377_180--Hb_000155_180 Hb_136731_010 Hb_136731_010 Hb_001377_180--Hb_136731_010 Hb_001377_180--Hb_000771_100 Hb_002374_020 Hb_002374_020 Hb_001377_180--Hb_002374_020 Hb_003011_040 Hb_003011_040 Hb_001377_180--Hb_003011_040 Hb_000641_020--Hb_000215_200 Hb_041205_010 Hb_041205_010 Hb_000641_020--Hb_041205_010 Hb_000635_070 Hb_000635_070 Hb_000641_020--Hb_000635_070 Hb_029142_070 Hb_029142_070 Hb_000641_020--Hb_029142_070 Hb_000710_070 Hb_000710_070 Hb_000641_020--Hb_000710_070 Hb_000155_180--Hb_000771_100 Hb_000155_180--Hb_003011_040 Hb_004502_020 Hb_004502_020 Hb_000155_180--Hb_004502_020 Hb_086703_010 Hb_086703_010 Hb_000155_180--Hb_086703_010 Hb_002272_260 Hb_002272_260 Hb_000155_180--Hb_002272_260 Hb_000215_200--Hb_041205_010 Hb_002284_050 Hb_002284_050 Hb_000215_200--Hb_002284_050 Hb_006995_040 Hb_006995_040 Hb_000215_200--Hb_006995_040 Hb_132180_010 Hb_132180_010 Hb_000215_200--Hb_132180_010 Hb_000083_170 Hb_000083_170 Hb_012653_040--Hb_000083_170 Hb_180301_010 Hb_180301_010 Hb_012653_040--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_012653_040--Hb_001504_080 Hb_006198_080 Hb_006198_080 Hb_012653_040--Hb_006198_080 Hb_037887_010 Hb_037887_010 Hb_012653_040--Hb_037887_010 Hb_000162_260 Hb_000162_260 Hb_012653_040--Hb_000162_260 Hb_000771_100--Hb_002272_260 Hb_000347_340 Hb_000347_340 Hb_000771_100--Hb_000347_340 Hb_000771_100--Hb_086703_010 Hb_000620_080 Hb_000620_080 Hb_000771_100--Hb_000620_080 Hb_000676_290 Hb_000676_290 Hb_000771_100--Hb_000676_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4115 0.479353 0.343888 2.87389 0.812874 2.93016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80801 2.20578 0.971164 0.728185 0.428223

CAGE analysis