Hb_003994_280

Information

Type -
Description -
Location Contig3994: 255065-268993
Sequence    

Annotation

kegg
ID rcu:RCOM_1574020
description hypothetical protein
nr
ID XP_012087342.1
description PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
swissprot
ID Q9FZ45
description Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1
trembl
ID A0A067JQD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22593 PE=4 SV=1
Gene Ontology
ID GO:0008233
description uncharacterized membrane protein at1g16860-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39779: 262300-262862 , PASA_asmbl_39780: 264510-269071 , PASA_asmbl_39781: 264510-266083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_280 0.0 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
2 Hb_001640_030 0.0737511417 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
3 Hb_002631_070 0.0738332013 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
4 Hb_000213_010 0.0748761476 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
5 Hb_000048_060 0.0775278807 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
6 Hb_001018_110 0.0844580025 - - unnamed protein product [Coffea canephora]
7 Hb_090051_030 0.0867515879 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
8 Hb_000260_010 0.0879260332 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
9 Hb_000300_050 0.0915289804 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001018_130 0.0926742867 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
11 Hb_005291_050 0.0928311142 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
12 Hb_001163_100 0.093469063 - - serine/threonine protein kinase, putative [Ricinus communis]
13 Hb_000050_190 0.0946928875 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005023_010 0.0964247301 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
15 Hb_027380_220 0.0964844031 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
16 Hb_000212_380 0.0966358468 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
17 Hb_002495_080 0.0968095891 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
18 Hb_004672_040 0.1008602263 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
19 Hb_001936_130 0.1010800618 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
20 Hb_002811_060 0.101676838 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_280 Hb_003994_280 Hb_001640_030 Hb_001640_030 Hb_003994_280--Hb_001640_030 Hb_002631_070 Hb_002631_070 Hb_003994_280--Hb_002631_070 Hb_000213_010 Hb_000213_010 Hb_003994_280--Hb_000213_010 Hb_000048_060 Hb_000048_060 Hb_003994_280--Hb_000048_060 Hb_001018_110 Hb_001018_110 Hb_003994_280--Hb_001018_110 Hb_090051_030 Hb_090051_030 Hb_003994_280--Hb_090051_030 Hb_001640_030--Hb_002631_070 Hb_152202_010 Hb_152202_010 Hb_001640_030--Hb_152202_010 Hb_000362_150 Hb_000362_150 Hb_001640_030--Hb_000362_150 Hb_004680_120 Hb_004680_120 Hb_001640_030--Hb_004680_120 Hb_000050_190 Hb_000050_190 Hb_001640_030--Hb_000050_190 Hb_009851_050 Hb_009851_050 Hb_002631_070--Hb_009851_050 Hb_000579_240 Hb_000579_240 Hb_002631_070--Hb_000579_240 Hb_000004_030 Hb_000004_030 Hb_002631_070--Hb_000004_030 Hb_002631_070--Hb_004680_120 Hb_012022_090 Hb_012022_090 Hb_000213_010--Hb_012022_090 Hb_000029_300 Hb_000029_300 Hb_000213_010--Hb_000029_300 Hb_001221_080 Hb_001221_080 Hb_000213_010--Hb_001221_080 Hb_021297_050 Hb_021297_050 Hb_000213_010--Hb_021297_050 Hb_003683_020 Hb_003683_020 Hb_000213_010--Hb_003683_020 Hb_000116_500 Hb_000116_500 Hb_000213_010--Hb_000116_500 Hb_000048_060--Hb_000213_010 Hb_000696_050 Hb_000696_050 Hb_000048_060--Hb_000696_050 Hb_004531_120 Hb_004531_120 Hb_000048_060--Hb_004531_120 Hb_001377_270 Hb_001377_270 Hb_000048_060--Hb_001377_270 Hb_123903_010 Hb_123903_010 Hb_000048_060--Hb_123903_010 Hb_000300_630 Hb_000300_630 Hb_001018_110--Hb_000300_630 Hb_005023_010 Hb_005023_010 Hb_001018_110--Hb_005023_010 Hb_001018_130 Hb_001018_130 Hb_001018_110--Hb_001018_130 Hb_044736_010 Hb_044736_010 Hb_001018_110--Hb_044736_010 Hb_072922_010 Hb_072922_010 Hb_001018_110--Hb_072922_010 Hb_082821_010 Hb_082821_010 Hb_090051_030--Hb_082821_010 Hb_001633_130 Hb_001633_130 Hb_090051_030--Hb_001633_130 Hb_000146_050 Hb_000146_050 Hb_090051_030--Hb_000146_050 Hb_090051_030--Hb_005023_010 Hb_033642_030 Hb_033642_030 Hb_090051_030--Hb_033642_030 Hb_006455_120 Hb_006455_120 Hb_090051_030--Hb_006455_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4062 8.61695 6.99358 22.2009 15.0575 15.8525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.88919 7.0496 17.3836 9.65616 14.4468

CAGE analysis