Hb_003994_290

Information

Type -
Description -
Location Contig3994: 269689-275885
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17930g
description POPTRDRAFT_1091492; hypothetical protein
nr
ID XP_012087344.1
description PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
swissprot
ID Q5E924
description Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic OS=Arabidopsis thaliana GN=GAPCP2 PE=2 SV=1
trembl
ID A0A067JZT7
description Glyceraldehyde-3-phosphate dehydrogenase OS=Jatropha curcas GN=JCGZ_22594 PE=3 SV=1
Gene Ontology
ID GO:0016620
description glyceraldehyde-3-phosphate dehydrogenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39783: 269774-275911 , PASA_asmbl_39784: 270332-270512
cDNA
(Sanger)
(ID:Location)		 032_M14.ab1: 272427-275910 , 050_H04.ab1: 272804-275910

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_290 0.0 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
2 Hb_032808_010 0.080168118 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
3 Hb_002016_170 0.0892833809 - - DNA binding protein, putative [Ricinus communis]
4 Hb_001711_020 0.0981577103 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
5 Hb_008511_120 0.0982424556 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
6 Hb_008013_050 0.0988288326 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
7 Hb_000521_080 0.1002922118 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
8 Hb_027380_130 0.1007047836 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
9 Hb_000331_180 0.101044944 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640220 [Jatropha curcas]
10 Hb_000676_250 0.1042336426 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
11 Hb_000094_280 0.1043591783 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
12 Hb_003050_270 0.104674472 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [Jatropha curcas]
13 Hb_000174_210 0.1053773133 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
14 Hb_002600_090 0.1055311258 - - ATP binding protein, putative [Ricinus communis]
15 Hb_005357_080 0.1058150412 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
16 Hb_172426_040 0.1060309233 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
17 Hb_003918_010 0.1067961526 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
18 Hb_000005_280 0.1069134879 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
19 Hb_002014_020 0.1070677637 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
20 Hb_000212_330 0.1079260406 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_290 Hb_003994_290 Hb_032808_010 Hb_032808_010 Hb_003994_290--Hb_032808_010 Hb_002016_170 Hb_002016_170 Hb_003994_290--Hb_002016_170 Hb_001711_020 Hb_001711_020 Hb_003994_290--Hb_001711_020 Hb_008511_120 Hb_008511_120 Hb_003994_290--Hb_008511_120 Hb_008013_050 Hb_008013_050 Hb_003994_290--Hb_008013_050 Hb_000521_080 Hb_000521_080 Hb_003994_290--Hb_000521_080 Hb_005730_120 Hb_005730_120 Hb_032808_010--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_032808_010--Hb_005271_220 Hb_032808_010--Hb_008511_120 Hb_002303_070 Hb_002303_070 Hb_032808_010--Hb_002303_070 Hb_003376_330 Hb_003376_330 Hb_032808_010--Hb_003376_330 Hb_002374_570 Hb_002374_570 Hb_002016_170--Hb_002374_570 Hb_000212_330 Hb_000212_330 Hb_002016_170--Hb_000212_330 Hb_001983_020 Hb_001983_020 Hb_002016_170--Hb_001983_020 Hb_000094_300 Hb_000094_300 Hb_002016_170--Hb_000094_300 Hb_181729_010 Hb_181729_010 Hb_002016_170--Hb_181729_010 Hb_000599_250 Hb_000599_250 Hb_001711_020--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_001711_020--Hb_004934_100 Hb_001300_150 Hb_001300_150 Hb_001711_020--Hb_001300_150 Hb_002600_090 Hb_002600_090 Hb_001711_020--Hb_002600_090 Hb_001971_010 Hb_001971_010 Hb_001711_020--Hb_001971_010 Hb_000375_350 Hb_000375_350 Hb_001711_020--Hb_000375_350 Hb_008511_120--Hb_005271_220 Hb_002232_410 Hb_002232_410 Hb_008511_120--Hb_002232_410 Hb_003918_010 Hb_003918_010 Hb_008511_120--Hb_003918_010 Hb_000521_320 Hb_000521_320 Hb_008511_120--Hb_000521_320 Hb_005357_080 Hb_005357_080 Hb_008511_120--Hb_005357_080 Hb_006059_050 Hb_006059_050 Hb_008013_050--Hb_006059_050 Hb_002301_150 Hb_002301_150 Hb_008013_050--Hb_002301_150 Hb_003502_060 Hb_003502_060 Hb_008013_050--Hb_003502_060 Hb_003151_040 Hb_003151_040 Hb_008013_050--Hb_003151_040 Hb_010098_050 Hb_010098_050 Hb_008013_050--Hb_010098_050 Hb_000030_030 Hb_000030_030 Hb_008013_050--Hb_000030_030 Hb_002141_030 Hb_002141_030 Hb_000521_080--Hb_002141_030 Hb_062135_030 Hb_062135_030 Hb_000521_080--Hb_062135_030 Hb_000521_080--Hb_000212_330 Hb_000521_080--Hb_000094_300 Hb_005054_230 Hb_005054_230 Hb_000521_080--Hb_005054_230 Hb_002728_070 Hb_002728_070 Hb_000521_080--Hb_002728_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.2133 17.0683 43.3233 41.8915 23.2057 31.9355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.564 40.5458 49.1336 42.3575 23.3942

CAGE analysis