Hb_003994_300

Information

Type -
Description -
Location Contig3994: 282286-296372
Sequence    

Annotation

kegg
ID rcu:RCOM_1574040
description hypothetical protein
nr
ID XP_002513329.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RHW0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1574040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39785: 282437-287713 , PASA_asmbl_39786: 282662-282991 , PASA_asmbl_39787: 296078-296632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_300 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000665_190 0.0997438272 - - conserved hypothetical protein [Ricinus communis]
3 Hb_027445_030 0.1078553133 - - F-box/LRR-repeat protein, putative [Ricinus communis]
4 Hb_007477_050 0.1091228336 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
5 Hb_003746_010 0.1123882307 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001049_150 0.1164927687 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
7 Hb_000399_060 0.1177914451 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
8 Hb_012339_010 0.1195057895 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000189_480 0.1195354085 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
10 Hb_011926_040 0.1215398871 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_000107_110 0.1218801234 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_001104_130 0.1219431984 - - C-14 sterol reductase, putative [Ricinus communis]
13 Hb_001882_020 0.124150426 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
14 Hb_002660_110 0.1245330346 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
15 Hb_009661_030 0.1253594313 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
16 Hb_002129_020 0.12602944 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
17 Hb_001491_030 0.1282802799 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
18 Hb_000671_130 0.1304352265 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
19 Hb_000920_310 0.1322520848 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_000417_170 0.1323601029 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_300 Hb_003994_300 Hb_000665_190 Hb_000665_190 Hb_003994_300--Hb_000665_190 Hb_027445_030 Hb_027445_030 Hb_003994_300--Hb_027445_030 Hb_007477_050 Hb_007477_050 Hb_003994_300--Hb_007477_050 Hb_003746_010 Hb_003746_010 Hb_003994_300--Hb_003746_010 Hb_001049_150 Hb_001049_150 Hb_003994_300--Hb_001049_150 Hb_000399_060 Hb_000399_060 Hb_003994_300--Hb_000399_060 Hb_000665_190--Hb_001049_150 Hb_000665_190--Hb_027445_030 Hb_000665_190--Hb_003746_010 Hb_003540_080 Hb_003540_080 Hb_000665_190--Hb_003540_080 Hb_011926_040 Hb_011926_040 Hb_000665_190--Hb_011926_040 Hb_001882_020 Hb_001882_020 Hb_027445_030--Hb_001882_020 Hb_000922_060 Hb_000922_060 Hb_027445_030--Hb_000922_060 Hb_005977_100 Hb_005977_100 Hb_027445_030--Hb_005977_100 Hb_008406_180 Hb_008406_180 Hb_027445_030--Hb_008406_180 Hb_000172_440 Hb_000172_440 Hb_007477_050--Hb_000172_440 Hb_000189_480 Hb_000189_480 Hb_007477_050--Hb_000189_480 Hb_001104_130 Hb_001104_130 Hb_007477_050--Hb_001104_130 Hb_002400_320 Hb_002400_320 Hb_007477_050--Hb_002400_320 Hb_009661_030 Hb_009661_030 Hb_007477_050--Hb_009661_030 Hb_001029_040 Hb_001029_040 Hb_003746_010--Hb_001029_040 Hb_009674_050 Hb_009674_050 Hb_003746_010--Hb_009674_050 Hb_005192_010 Hb_005192_010 Hb_003746_010--Hb_005192_010 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_001623_080 Hb_001623_080 Hb_001049_150--Hb_001623_080 Hb_001049_150--Hb_011926_040 Hb_026549_070 Hb_026549_070 Hb_001049_150--Hb_026549_070 Hb_000062_400 Hb_000062_400 Hb_001049_150--Hb_000062_400 Hb_001976_060 Hb_001976_060 Hb_001049_150--Hb_001976_060 Hb_000320_340 Hb_000320_340 Hb_000399_060--Hb_000320_340 Hb_000399_060--Hb_011926_040 Hb_000014_040 Hb_000014_040 Hb_000399_060--Hb_000014_040 Hb_000665_180 Hb_000665_180 Hb_000399_060--Hb_000665_180 Hb_001157_230 Hb_001157_230 Hb_000399_060--Hb_001157_230 Hb_000399_060--Hb_008406_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52912 3.96364 5.97184 24.0301 4.13948 6.11524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.89556 4.30733 4.7325 2.85466 15.0323

CAGE analysis