Hb_003995_040

Information

Type -
Description -
Location Contig3995: 90550-92444
Sequence    

Annotation

kegg
ID rcu:RCOM_0233850
description tropinone reductase, putative (EC:1.1.1.206)
nr
ID XP_012074990.1
description PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
swissprot
ID Q9LHT0
description Tropinone reductase homolog At5g06060 OS=Arabidopsis thaliana GN=At5g06060 PE=2 SV=1
trembl
ID A0A067KTU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09123 PE=3 SV=1
Gene Ontology
ID GO:0016491
description tropinone reductase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39797: 91256-92380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003995_040 0.0 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
2 Hb_000417_240 0.0001401316 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
3 Hb_000173_070 0.000680497 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
4 Hb_000307_080 0.0016723404 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000280_070 0.0036342189 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
6 Hb_000784_050 0.0041589171 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
7 Hb_007975_070 0.0050857831 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
8 Hb_002151_140 0.0058894322 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
9 Hb_105767_030 0.0064900709 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003667_030 0.0126335995 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
11 Hb_000489_050 0.0147249972 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
12 Hb_130862_010 0.015748717 - - purine permease, putative [Ricinus communis]
13 Hb_090511_010 0.0179991958 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
14 Hb_000334_100 0.0182350169 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
15 Hb_012675_030 0.0183062537 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
16 Hb_000008_100 0.021808154 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
17 Hb_002391_280 0.0228897243 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
18 Hb_000769_040 0.0230906078 - - hypothetical protein VITISV_028082 [Vitis vinifera]
19 Hb_002817_020 0.0232591126 - - -
20 Hb_022862_010 0.0268825477 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_003995_040 Hb_003995_040 Hb_000417_240 Hb_000417_240 Hb_003995_040--Hb_000417_240 Hb_000173_070 Hb_000173_070 Hb_003995_040--Hb_000173_070 Hb_000307_080 Hb_000307_080 Hb_003995_040--Hb_000307_080 Hb_000280_070 Hb_000280_070 Hb_003995_040--Hb_000280_070 Hb_000784_050 Hb_000784_050 Hb_003995_040--Hb_000784_050 Hb_007975_070 Hb_007975_070 Hb_003995_040--Hb_007975_070 Hb_000417_240--Hb_000173_070 Hb_000417_240--Hb_000307_080 Hb_000417_240--Hb_000280_070 Hb_000417_240--Hb_000784_050 Hb_000417_240--Hb_007975_070 Hb_000173_070--Hb_000307_080 Hb_000173_070--Hb_000280_070 Hb_000173_070--Hb_000784_050 Hb_002151_140 Hb_002151_140 Hb_000173_070--Hb_002151_140 Hb_000307_080--Hb_000280_070 Hb_000307_080--Hb_000784_050 Hb_000307_080--Hb_002151_140 Hb_000280_070--Hb_000784_050 Hb_000280_070--Hb_002151_140 Hb_000784_050--Hb_002151_140 Hb_105767_030 Hb_105767_030 Hb_007975_070--Hb_105767_030 Hb_007975_070--Hb_000173_070 Hb_007975_070--Hb_000307_080 Hb_007975_070--Hb_000280_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.64089 0.174573 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis