Hb_003996_020

Information

Type -
Description -
Location Contig3996: 14325-15698
Sequence    

Annotation

kegg
ID rcu:RCOM_0442790
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002532784.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID P0C043
description Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1
trembl
ID B9T3G5
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0442790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003996_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_002759_060 0.0640672452 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
3 Hb_006922_110 0.068433439 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
4 Hb_061090_010 0.0686741923 - - RAN BINDING protein 1 [Populus trichocarpa]
5 Hb_001242_110 0.0712338254 - - 40S ribosomal protein S18, putative [Ricinus communis]
6 Hb_033834_040 0.0721863308 - - conserved hypothetical protein [Ricinus communis]
7 Hb_154648_010 0.0740778847 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
8 Hb_000200_050 0.0749257216 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000058_060 0.0754231557 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
10 Hb_000000_250 0.0754560359 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
11 Hb_005289_030 0.0763123175 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
12 Hb_004976_030 0.0781996376 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
13 Hb_027073_040 0.0784961338 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
14 Hb_000205_270 0.0815286028 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
15 Hb_004218_110 0.0818791681 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
16 Hb_002183_090 0.0840947363 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
17 Hb_000979_230 0.0853851525 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
18 Hb_000086_400 0.0855146331 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_000510_320 0.0855522297 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
20 Hb_003615_010 0.0855660154 - - 60S ribosomal protein L8, putative [Ricinus communis]

Gene co-expression network

sample Hb_003996_020 Hb_003996_020 Hb_002759_060 Hb_002759_060 Hb_003996_020--Hb_002759_060 Hb_006922_110 Hb_006922_110 Hb_003996_020--Hb_006922_110 Hb_061090_010 Hb_061090_010 Hb_003996_020--Hb_061090_010 Hb_001242_110 Hb_001242_110 Hb_003996_020--Hb_001242_110 Hb_033834_040 Hb_033834_040 Hb_003996_020--Hb_033834_040 Hb_154648_010 Hb_154648_010 Hb_003996_020--Hb_154648_010 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_006922_110--Hb_154648_010 Hb_000000_250 Hb_000000_250 Hb_006922_110--Hb_000000_250 Hb_029584_130 Hb_029584_130 Hb_006922_110--Hb_029584_130 Hb_000200_050 Hb_000200_050 Hb_006922_110--Hb_000200_050 Hb_003266_130 Hb_003266_130 Hb_006922_110--Hb_003266_130 Hb_001818_090 Hb_001818_090 Hb_061090_010--Hb_001818_090 Hb_003615_010 Hb_003615_010 Hb_061090_010--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_061090_010--Hb_002026_180 Hb_019280_040 Hb_019280_040 Hb_061090_010--Hb_019280_040 Hb_007441_120 Hb_007441_120 Hb_061090_010--Hb_007441_120 Hb_148209_080 Hb_148209_080 Hb_001242_110--Hb_148209_080 Hb_000028_140 Hb_000028_140 Hb_001242_110--Hb_000028_140 Hb_000227_230 Hb_000227_230 Hb_001242_110--Hb_000227_230 Hb_015175_030 Hb_015175_030 Hb_001242_110--Hb_015175_030 Hb_001242_110--Hb_027073_040 Hb_002226_070 Hb_002226_070 Hb_033834_040--Hb_002226_070 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_000926_250 Hb_000926_250 Hb_033834_040--Hb_000926_250 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020 Hb_154648_010--Hb_000000_250 Hb_004976_030 Hb_004976_030 Hb_154648_010--Hb_004976_030 Hb_003018_190 Hb_003018_190 Hb_154648_010--Hb_003018_190 Hb_006816_140 Hb_006816_140 Hb_154648_010--Hb_006816_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55059 0.852942 0.593596 1.26682 1.5722 2.80063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07434 3.04614 3.05504 1.64138 0.736819

CAGE analysis