Hb_003998_040

Information

Type -
Description -
Location Contig3998: 64710-88798
Sequence    

Annotation

kegg
ID rcu:RCOM_0031070
description organic anion transporter, putative
nr
ID XP_002533887.1
description organic anion transporter, putative [Ricinus communis]
swissprot
ID Q9SRE4
description UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1
trembl
ID B9T6L8
description Organic anion transporter, putative OS=Ricinus communis GN=RCOM_0031070 PE=4 SV=1
Gene Ontology
ID GO:0005338
description udp-galactose transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39801: 64842-88674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003998_040 0.0 - - organic anion transporter, putative [Ricinus communis]
2 Hb_000066_030 0.0487381754 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
3 Hb_005218_020 0.0612809012 - - Uncharacterized protein isoform 3 [Theobroma cacao]
4 Hb_011214_160 0.0652029736 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
5 Hb_007765_040 0.068308722 - - Cytosolic enolase isoform 3 [Theobroma cacao]
6 Hb_001633_080 0.0684925765 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
7 Hb_000371_090 0.0731123082 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
8 Hb_000197_020 0.0739731167 - - PREDICTED: protein RER1A [Jatropha curcas]
9 Hb_000917_130 0.0798243511 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
10 Hb_003097_140 0.0804855543 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
11 Hb_004055_120 0.0808503126 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
12 Hb_001703_050 0.0815091411 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
13 Hb_003988_050 0.0815737848 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
14 Hb_000477_100 0.0823918498 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
15 Hb_007481_010 0.0833156017 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
16 Hb_000389_030 0.08377491 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
17 Hb_000184_070 0.0839293835 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
18 Hb_001051_070 0.0853213567 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
19 Hb_001957_010 0.0856245234 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
20 Hb_003878_200 0.0856692665 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]

Gene co-expression network

sample Hb_003998_040 Hb_003998_040 Hb_000066_030 Hb_000066_030 Hb_003998_040--Hb_000066_030 Hb_005218_020 Hb_005218_020 Hb_003998_040--Hb_005218_020 Hb_011214_160 Hb_011214_160 Hb_003998_040--Hb_011214_160 Hb_007765_040 Hb_007765_040 Hb_003998_040--Hb_007765_040 Hb_001633_080 Hb_001633_080 Hb_003998_040--Hb_001633_080 Hb_000371_090 Hb_000371_090 Hb_003998_040--Hb_000371_090 Hb_000066_030--Hb_005218_020 Hb_000197_020 Hb_000197_020 Hb_000066_030--Hb_000197_020 Hb_000066_030--Hb_007765_040 Hb_000066_030--Hb_000371_090 Hb_000066_030--Hb_011214_160 Hb_005218_020--Hb_007765_040 Hb_000917_130 Hb_000917_130 Hb_005218_020--Hb_000917_130 Hb_003529_030 Hb_003529_030 Hb_005218_020--Hb_003529_030 Hb_004055_120 Hb_004055_120 Hb_005218_020--Hb_004055_120 Hb_001703_050 Hb_001703_050 Hb_011214_160--Hb_001703_050 Hb_011214_160--Hb_000371_090 Hb_001051_070 Hb_001051_070 Hb_011214_160--Hb_001051_070 Hb_011214_160--Hb_000197_020 Hb_000139_530 Hb_000139_530 Hb_011214_160--Hb_000139_530 Hb_000390_050 Hb_000390_050 Hb_007765_040--Hb_000390_050 Hb_003097_140 Hb_003097_140 Hb_007765_040--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_007765_040--Hb_007416_210 Hb_009193_090 Hb_009193_090 Hb_001633_080--Hb_009193_090 Hb_010407_140 Hb_010407_140 Hb_001633_080--Hb_010407_140 Hb_003988_050 Hb_003988_050 Hb_001633_080--Hb_003988_050 Hb_001957_010 Hb_001957_010 Hb_001633_080--Hb_001957_010 Hb_062537_010 Hb_062537_010 Hb_001633_080--Hb_062537_010 Hb_000184_070 Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_000261_210 Hb_000261_210 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.09284 6.71264 15.8509 32.3313 9.46743 12.2847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.26422 8.83526 11.4503 16.0161 15.0869

CAGE analysis