Hb_004000_030

Information

Type -
Description -
Location Contig4000: 21018-24116
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID ADB85429.1
description putative retrotransposon protein [Phyllostachys edulis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID D3IVT9
description Putative retrotransposon protein OS=Phyllostachys edulis PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004000_030 0.0 - - putative retrotransposon protein [Phyllostachys edulis]
2 Hb_181803_010 7.38064e-05 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
3 Hb_185830_040 0.0011660559 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
4 Hb_183433_020 0.0012814898 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
5 Hb_002793_010 0.0016128321 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
6 Hb_170365_010 0.0018828088 - - Retrotransposon protein, putative [Theobroma cacao]
7 Hb_052135_010 0.0019827408 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
8 Hb_000856_220 0.0020328486 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
9 Hb_005714_080 0.0037590499 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
10 Hb_007227_010 0.0081369633 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
11 Hb_007289_010 0.0093345583 - - cytochrome P450, putative [Ricinus communis]
12 Hb_008021_020 0.0094867337 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
13 Hb_000283_170 0.0098004136 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000023_040 0.0176730565 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000319_100 0.0181880014 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
16 Hb_001587_130 0.018522106 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
17 Hb_004968_110 0.019409377 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
18 Hb_000156_020 0.0195900229 - - PREDICTED: la-related protein 6A [Jatropha curcas]
19 Hb_003176_030 0.0195900229 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
20 Hb_000940_090 0.0214394512 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]

Gene co-expression network

sample Hb_004000_030 Hb_004000_030 Hb_181803_010 Hb_181803_010 Hb_004000_030--Hb_181803_010 Hb_185830_040 Hb_185830_040 Hb_004000_030--Hb_185830_040 Hb_183433_020 Hb_183433_020 Hb_004000_030--Hb_183433_020 Hb_002793_010 Hb_002793_010 Hb_004000_030--Hb_002793_010 Hb_170365_010 Hb_170365_010 Hb_004000_030--Hb_170365_010 Hb_052135_010 Hb_052135_010 Hb_004000_030--Hb_052135_010 Hb_181803_010--Hb_183433_020 Hb_181803_010--Hb_185830_040 Hb_181803_010--Hb_002793_010 Hb_181803_010--Hb_170365_010 Hb_181803_010--Hb_052135_010 Hb_185830_040--Hb_002793_010 Hb_000856_220 Hb_000856_220 Hb_185830_040--Hb_000856_220 Hb_185830_040--Hb_183433_020 Hb_185830_040--Hb_170365_010 Hb_183433_020--Hb_170365_010 Hb_183433_020--Hb_052135_010 Hb_005714_080 Hb_005714_080 Hb_183433_020--Hb_005714_080 Hb_002793_010--Hb_000856_220 Hb_002793_010--Hb_183433_020 Hb_002793_010--Hb_170365_010 Hb_170365_010--Hb_052135_010 Hb_170365_010--Hb_005714_080 Hb_052135_010--Hb_005714_080 Hb_052135_010--Hb_185830_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00585186 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00550171 0

CAGE analysis