Hb_004003_020

Information

Type -
Description -
Location Contig4003: 19854-28755
Sequence    

Annotation

kegg
ID egr:104441780
description protein NP24-like
nr
ID CDP16244.1
description unnamed protein product [Coffea canephora]
swissprot
ID P81370
description Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2
trembl
ID A0A068V707
description Coffea canephora DH200=94 genomic scaffold, scaffold_120 OS=Coffea canephora GN=GSCOC_T00018006001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39814: 22991-24012
cDNA
(Sanger)
(ID:Location)		 003_G24.ab1: 23221-24001 , 003_L07.ab1: 23260-24010 , 004_K23.ab1: 23218-24010 , 004_L24.ab1: 23202-24001 , 007_D20.ab1: 23205-24010 , 013_J07.ab1: 23224-24010 , 016_B20.ab1: 23225-24001 , 016_K18.ab1: 23287-24008 , 019_G09.ab1: 23401-24010 , 021_D13.ab1: 23224-24008 , 021_M02.ab1: 23224-24012 , 025_K18.ab1: 23230-24010 , 033_L12.ab1: 23257-24012 , 034_D22.ab1: 23208-24006 , 034_E01.ab1: 23226-24010 , 036_A02.ab1: 23223-24016 , 036_B17.ab1: 23247-24008 , 036_L13.ab1: 23211-23987 , 038_L01.ab1: 23223-24010 , 042_C01.ab1: 23209-24008 , 042_H02.ab1: 23225-24008 , 047_C02.ab1: 23225-24008 , 051_A06.ab1: 23300-24010

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004003_020 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_054615_010 0.0729980747 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
3 Hb_002121_030 0.0836807024 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
4 Hb_000051_150 0.0881590418 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
5 Hb_000010_320 0.0881737861 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
6 Hb_000445_320 0.0917175337 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
7 Hb_158845_010 0.0953261126 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
8 Hb_059832_010 0.0968238822 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
9 Hb_000152_650 0.0972191031 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_001369_590 0.0972681157 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
11 Hb_001377_340 0.1013778986 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
12 Hb_089736_010 0.1016103092 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
13 Hb_005365_040 0.10331607 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
14 Hb_000187_020 0.1038071822 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
15 Hb_052530_010 0.1058469031 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
16 Hb_088118_010 0.1073957298 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
17 Hb_000809_220 0.1076371239 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
18 Hb_015299_040 0.1090242369 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
19 Hb_074240_030 0.1090621852 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
20 Hb_000436_110 0.109843814 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]

Gene co-expression network

sample Hb_004003_020 Hb_004003_020 Hb_054615_010 Hb_054615_010 Hb_004003_020--Hb_054615_010 Hb_002121_030 Hb_002121_030 Hb_004003_020--Hb_002121_030 Hb_000051_150 Hb_000051_150 Hb_004003_020--Hb_000051_150 Hb_000010_320 Hb_000010_320 Hb_004003_020--Hb_000010_320 Hb_000445_320 Hb_000445_320 Hb_004003_020--Hb_000445_320 Hb_158845_010 Hb_158845_010 Hb_004003_020--Hb_158845_010 Hb_089736_010 Hb_089736_010 Hb_054615_010--Hb_089736_010 Hb_074240_030 Hb_074240_030 Hb_054615_010--Hb_074240_030 Hb_088118_010 Hb_088118_010 Hb_054615_010--Hb_088118_010 Hb_000152_650 Hb_000152_650 Hb_054615_010--Hb_000152_650 Hb_054615_010--Hb_002121_030 Hb_001369_590 Hb_001369_590 Hb_002121_030--Hb_001369_590 Hb_002121_030--Hb_000051_150 Hb_000809_220 Hb_000809_220 Hb_002121_030--Hb_000809_220 Hb_002121_030--Hb_000152_650 Hb_005365_040 Hb_005365_040 Hb_002121_030--Hb_005365_040 Hb_000051_150--Hb_000809_220 Hb_000051_150--Hb_005365_040 Hb_104014_010 Hb_104014_010 Hb_000051_150--Hb_104014_010 Hb_010422_020 Hb_010422_020 Hb_000051_150--Hb_010422_020 Hb_000051_150--Hb_001369_590 Hb_000010_320--Hb_074240_030 Hb_000010_320--Hb_158845_010 Hb_059832_010 Hb_059832_010 Hb_000010_320--Hb_059832_010 Hb_015299_040 Hb_015299_040 Hb_000010_320--Hb_015299_040 Hb_000397_060 Hb_000397_060 Hb_000010_320--Hb_000397_060 Hb_001856_190 Hb_001856_190 Hb_000010_320--Hb_001856_190 Hb_000187_020 Hb_000187_020 Hb_000445_320--Hb_000187_020 Hb_002453_040 Hb_002453_040 Hb_000445_320--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_000445_320--Hb_052530_010 Hb_000445_320--Hb_059832_010 Hb_000193_170 Hb_000193_170 Hb_000445_320--Hb_000193_170 Hb_005918_020 Hb_005918_020 Hb_000445_320--Hb_005918_020 Hb_158845_010--Hb_015299_040 Hb_158845_010--Hb_059832_010 Hb_158845_010--Hb_074240_030 Hb_001357_160 Hb_001357_160 Hb_158845_010--Hb_001357_160 Hb_158845_010--Hb_054615_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.75317 76.0148 18.3063 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.405829 0 0 0.16118 13.1564

CAGE analysis