Hb_004007_050

Information

Type transcription factor
Description TF Family: GRAS
Location Contig4007: 41748-43250
Sequence    

Annotation

kegg
ID pop:POPTR_0012s06430g
description hypothetical protein
nr
ID XP_012079411.1
description PREDICTED: protein SHORT-ROOT [Jatropha curcas]
swissprot
ID Q9SZF7
description Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1
trembl
ID A0A067KAN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12539 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein short-root-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39831: 42984-43175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_050 0.0 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
2 Hb_004128_150 0.04452421 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
3 Hb_004453_160 0.0547955734 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001958_040 0.0585151698 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
5 Hb_023640_020 0.0683291064 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000031_240 0.0697490671 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_011310_170 0.0731180979 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
8 Hb_006614_020 0.0748785845 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
9 Hb_019516_010 0.0788172452 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
10 Hb_007221_020 0.0792639075 - - FAD-binding domain-containing family protein [Populus trichocarpa]
11 Hb_000397_060 0.0808344444 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
12 Hb_049846_010 0.0813244867 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
13 Hb_000073_040 0.0827386739 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
14 Hb_000139_040 0.0889309557 - - spermine synthase, putative [Ricinus communis]
15 Hb_031321_020 0.0895767895 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
16 Hb_000375_220 0.0917736738 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
17 Hb_000331_170 0.0922558747 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
18 Hb_000127_240 0.0955830835 - - SAUR39 [Populus tomentosa]
19 Hb_007576_090 0.0963953671 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
20 Hb_000160_190 0.0968491869 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]

Gene co-expression network

sample Hb_004007_050 Hb_004007_050 Hb_004128_150 Hb_004128_150 Hb_004007_050--Hb_004128_150 Hb_004453_160 Hb_004453_160 Hb_004007_050--Hb_004453_160 Hb_001958_040 Hb_001958_040 Hb_004007_050--Hb_001958_040 Hb_023640_020 Hb_023640_020 Hb_004007_050--Hb_023640_020 Hb_000031_240 Hb_000031_240 Hb_004007_050--Hb_000031_240 Hb_011310_170 Hb_011310_170 Hb_004007_050--Hb_011310_170 Hb_006614_020 Hb_006614_020 Hb_004128_150--Hb_006614_020 Hb_004128_150--Hb_023640_020 Hb_004128_150--Hb_011310_170 Hb_004128_150--Hb_001958_040 Hb_004128_150--Hb_004453_160 Hb_007221_020 Hb_007221_020 Hb_004453_160--Hb_007221_020 Hb_132840_190 Hb_132840_190 Hb_004453_160--Hb_132840_190 Hb_004453_160--Hb_000031_240 Hb_002307_140 Hb_002307_140 Hb_004453_160--Hb_002307_140 Hb_000073_040 Hb_000073_040 Hb_001958_040--Hb_000073_040 Hb_000397_060 Hb_000397_060 Hb_001958_040--Hb_000397_060 Hb_001301_310 Hb_001301_310 Hb_001958_040--Hb_001301_310 Hb_019516_010 Hb_019516_010 Hb_001958_040--Hb_019516_010 Hb_000160_190 Hb_000160_190 Hb_023640_020--Hb_000160_190 Hb_004137_110 Hb_004137_110 Hb_023640_020--Hb_004137_110 Hb_000139_040 Hb_000139_040 Hb_023640_020--Hb_000139_040 Hb_005977_080 Hb_005977_080 Hb_023640_020--Hb_005977_080 Hb_000331_170 Hb_000331_170 Hb_000031_240--Hb_000331_170 Hb_000031_240--Hb_001958_040 Hb_000031_240--Hb_011310_170 Hb_000031_240--Hb_005977_080 Hb_011310_170--Hb_023640_020 Hb_011310_170--Hb_005977_080 Hb_011310_170--Hb_000331_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.013677 0.859402 28.4279 18.0378 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0195681 8.20565

CAGE analysis