Hb_004007_100

Information

Type -
Description -
Location Contig4007: 82944-83384
Sequence    

Annotation

kegg
ID tcc:TCM_025183
description Translation protein SH3-like family protein
nr
ID XP_012079404.1
description PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
swissprot
ID P51414
description 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2
trembl
ID A0A067KAN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12534 PE=3 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l26-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39844: 82873-83572
cDNA
(Sanger)
(ID:Location)		 013_I01.ab1: 82874-83550 , 026_P10.ab1: 82874-83512 , 027_F16.ab1: 82874-83496 , 031_F21.ab1: 82874-83549 , 032_C19.ab1: 82872-83496 , 035_K03.ab1: 82879-83548 , 041_B05.ab1: 82872-83548 , 042_H04.ab1: 82873-83545 , 048_A03.ab1: 82874-83022

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_100 0.0 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
2 Hb_002701_050 0.0564068248 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
3 Hb_008173_120 0.085171622 - - conserved hypothetical protein [Ricinus communis]
4 Hb_148209_080 0.0908586991 - - MED32, putative [Theobroma cacao]
5 Hb_000684_230 0.0965830138 - - 40S ribosomal protein S23, putative [Ricinus communis]
6 Hb_001242_110 0.0992102519 - - 40S ribosomal protein S18, putative [Ricinus communis]
7 Hb_031042_010 0.1013980896 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
8 Hb_007317_060 0.1034630442 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
9 Hb_000156_130 0.1100460905 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
10 Hb_000199_070 0.1124460584 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007441_270 0.1128343991 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
12 Hb_015175_030 0.1132315197 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
13 Hb_000184_050 0.1133578346 - - NOI, putative [Ricinus communis]
14 Hb_000274_020 0.114228409 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
15 Hb_005400_030 0.1145542994 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
16 Hb_003058_220 0.1148192346 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
17 Hb_000193_350 0.1152176782 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
18 Hb_000196_050 0.11540787 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
19 Hb_000380_190 0.1157875046 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
20 Hb_004032_100 0.1159414179 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]

Gene co-expression network

sample Hb_004007_100 Hb_004007_100 Hb_002701_050 Hb_002701_050 Hb_004007_100--Hb_002701_050 Hb_008173_120 Hb_008173_120 Hb_004007_100--Hb_008173_120 Hb_148209_080 Hb_148209_080 Hb_004007_100--Hb_148209_080 Hb_000684_230 Hb_000684_230 Hb_004007_100--Hb_000684_230 Hb_001242_110 Hb_001242_110 Hb_004007_100--Hb_001242_110 Hb_031042_010 Hb_031042_010 Hb_004007_100--Hb_031042_010 Hb_000199_070 Hb_000199_070 Hb_002701_050--Hb_000199_070 Hb_015175_030 Hb_015175_030 Hb_002701_050--Hb_015175_030 Hb_002701_050--Hb_001242_110 Hb_000526_040 Hb_000526_040 Hb_002701_050--Hb_000526_040 Hb_002701_050--Hb_148209_080 Hb_008173_120--Hb_000684_230 Hb_000230_540 Hb_000230_540 Hb_008173_120--Hb_000230_540 Hb_007193_100 Hb_007193_100 Hb_008173_120--Hb_007193_100 Hb_007317_060 Hb_007317_060 Hb_008173_120--Hb_007317_060 Hb_000103_140 Hb_000103_140 Hb_008173_120--Hb_000103_140 Hb_148209_080--Hb_001242_110 Hb_000340_140 Hb_000340_140 Hb_148209_080--Hb_000340_140 Hb_148209_080--Hb_000230_540 Hb_004032_100 Hb_004032_100 Hb_148209_080--Hb_004032_100 Hb_000751_130 Hb_000751_130 Hb_148209_080--Hb_000751_130 Hb_148209_080--Hb_015175_030 Hb_000684_230--Hb_007193_100 Hb_000024_080 Hb_000024_080 Hb_000684_230--Hb_000024_080 Hb_000003_730 Hb_000003_730 Hb_000684_230--Hb_000003_730 Hb_000684_230--Hb_007317_060 Hb_000684_230--Hb_000103_140 Hb_000028_140 Hb_000028_140 Hb_001242_110--Hb_000028_140 Hb_003996_020 Hb_003996_020 Hb_001242_110--Hb_003996_020 Hb_000227_230 Hb_000227_230 Hb_001242_110--Hb_000227_230 Hb_001242_110--Hb_015175_030 Hb_027073_040 Hb_027073_040 Hb_001242_110--Hb_027073_040 Hb_000196_050 Hb_000196_050 Hb_031042_010--Hb_000196_050 Hb_000500_060 Hb_000500_060 Hb_031042_010--Hb_000500_060 Hb_007441_270 Hb_007441_270 Hb_031042_010--Hb_007441_270 Hb_031042_010--Hb_002701_050 Hb_000561_020 Hb_000561_020 Hb_031042_010--Hb_000561_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
397.958 290.891 113.051 308.831 393.206 1362.35
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
802.706 1431.65 662.52 364.613 110.78

CAGE analysis