Hb_004007_110

Information

Type -
Description -
Location Contig4007: 86525-90022
Sequence    

Annotation

kegg
ID tcc:TCM_000790
description Voltage dependent anion channel 2
nr
ID XP_012079403.1
description PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
swissprot
ID Q9FJX3
description Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=VDAC2 PE=1 SV=1
trembl
ID A0A067K7H3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12533 PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial outer membrane protein porin 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39845: 86489-89921 , PASA_asmbl_39846: 86603-89919 , PASA_asmbl_39849: 89938-90078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_110 0.0 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
2 Hb_000012_110 0.0829108833 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
3 Hb_007590_090 0.0881055335 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
4 Hb_002110_100 0.1043705802 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
5 Hb_004158_020 0.1059746433 - - Rab1 [Hevea brasiliensis]
6 Hb_028049_010 0.1076917042 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_012305_130 0.1077227445 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
8 Hb_002615_030 0.1084127198 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
9 Hb_000428_060 0.1086164774 - - malate dehydrogenase, putative [Ricinus communis]
10 Hb_027073_010 0.1096135296 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
11 Hb_032920_070 0.1097297043 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
12 Hb_015057_020 0.1097450288 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
13 Hb_001998_200 0.115135037 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
14 Hb_021409_080 0.1167158922 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
15 Hb_000288_020 0.1170068472 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010997_090 0.1189884436 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
17 Hb_001817_100 0.1223332297 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
18 Hb_002217_100 0.1226360966 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
19 Hb_000110_120 0.1231441736 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
20 Hb_000032_370 0.1250205033 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]

Gene co-expression network

sample Hb_004007_110 Hb_004007_110 Hb_000012_110 Hb_000012_110 Hb_004007_110--Hb_000012_110 Hb_007590_090 Hb_007590_090 Hb_004007_110--Hb_007590_090 Hb_002110_100 Hb_002110_100 Hb_004007_110--Hb_002110_100 Hb_004158_020 Hb_004158_020 Hb_004007_110--Hb_004158_020 Hb_028049_010 Hb_028049_010 Hb_004007_110--Hb_028049_010 Hb_012305_130 Hb_012305_130 Hb_004007_110--Hb_012305_130 Hb_001998_200 Hb_001998_200 Hb_000012_110--Hb_001998_200 Hb_002615_030 Hb_002615_030 Hb_000012_110--Hb_002615_030 Hb_000012_110--Hb_007590_090 Hb_003602_060 Hb_003602_060 Hb_000012_110--Hb_003602_060 Hb_015057_020 Hb_015057_020 Hb_000012_110--Hb_015057_020 Hb_001817_100 Hb_001817_100 Hb_007590_090--Hb_001817_100 Hb_007590_090--Hb_002615_030 Hb_007590_090--Hb_001998_200 Hb_002217_100 Hb_002217_100 Hb_007590_090--Hb_002217_100 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_000402_130 Hb_000402_130 Hb_004158_020--Hb_000402_130 Hb_004158_020--Hb_032920_070 Hb_001754_080 Hb_001754_080 Hb_004158_020--Hb_001754_080 Hb_000023_310 Hb_000023_310 Hb_004158_020--Hb_000023_310 Hb_028049_010--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_028049_010--Hb_000110_120 Hb_021409_080 Hb_021409_080 Hb_028049_010--Hb_021409_080 Hb_000771_060 Hb_000771_060 Hb_028049_010--Hb_000771_060 Hb_000428_060 Hb_000428_060 Hb_028049_010--Hb_000428_060 Hb_012305_130--Hb_021409_080 Hb_012305_130--Hb_000110_120 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_012305_130--Hb_002110_100 Hb_004627_030 Hb_004627_030 Hb_012305_130--Hb_004627_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9595 10.325 19.1987 47.2022 2.40128 4.82853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5998 28.9011 19.3537 23.2537 28.7793

CAGE analysis