Hb_004007_120

Information

Type -
Description -
Location Contig4007: 94992-115622
Sequence    

Annotation

kegg
ID egr:104418446
description calcium-transporting ATPase 2, plasma membrane-type
nr
ID XP_011011239.1
description PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
swissprot
ID O81108
description Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1
trembl
ID A0A059AMY9
description Calcium-transporting ATPase OS=Eucalyptus grandis GN=EUGRSUZ_I00710 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39851: 103446-104541 , PASA_asmbl_39852: 104813-105264 , PASA_asmbl_39853: 105852-113771 , PASA_asmbl_39854: 113785-115229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_120 0.0 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
2 Hb_000977_090 0.0986480598 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
3 Hb_000120_070 0.125035126 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
4 Hb_000914_130 0.1268918027 - - copper-transporting atpase p-type, putative [Ricinus communis]
5 Hb_004218_160 0.1342157589 - - NBS-LRR type disease resistance protein [Medicago truncatula]
6 Hb_003556_070 0.1405148633 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_005649_010 0.141150101 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
8 Hb_006970_150 0.1471147348 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
9 Hb_008948_080 0.1507020782 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
10 Hb_000130_080 0.1526213093 - - unnamed protein product [Vitis vinifera]
11 Hb_002343_020 0.1536619406 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
12 Hb_029622_020 0.1550801066 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010174_190 0.1574494847 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
14 Hb_073119_010 0.1575614211 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
15 Hb_000252_080 0.1585020694 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
16 Hb_114684_010 0.1610320374 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
17 Hb_008215_010 0.1634970314 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000836_390 0.1648826668 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
19 Hb_168068_010 0.1657107406 - - Disease resistance protein RFL1, putative [Ricinus communis]
20 Hb_001355_070 0.1683106761 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_004007_120 Hb_004007_120 Hb_000977_090 Hb_000977_090 Hb_004007_120--Hb_000977_090 Hb_000120_070 Hb_000120_070 Hb_004007_120--Hb_000120_070 Hb_000914_130 Hb_000914_130 Hb_004007_120--Hb_000914_130 Hb_004218_160 Hb_004218_160 Hb_004007_120--Hb_004218_160 Hb_003556_070 Hb_003556_070 Hb_004007_120--Hb_003556_070 Hb_005649_010 Hb_005649_010 Hb_004007_120--Hb_005649_010 Hb_000977_090--Hb_003556_070 Hb_000977_090--Hb_000120_070 Hb_052764_080 Hb_052764_080 Hb_000977_090--Hb_052764_080 Hb_073119_010 Hb_073119_010 Hb_000977_090--Hb_073119_010 Hb_002324_050 Hb_002324_050 Hb_000977_090--Hb_002324_050 Hb_000836_390 Hb_000836_390 Hb_000120_070--Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_000120_070--Hb_007765_140 Hb_008215_010 Hb_008215_010 Hb_000120_070--Hb_008215_010 Hb_000075_110 Hb_000075_110 Hb_000120_070--Hb_000075_110 Hb_000120_070--Hb_003556_070 Hb_006970_150 Hb_006970_150 Hb_000120_070--Hb_006970_150 Hb_000130_080 Hb_000130_080 Hb_000914_130--Hb_000130_080 Hb_000914_130--Hb_008215_010 Hb_000914_130--Hb_005649_010 Hb_000227_370 Hb_000227_370 Hb_000914_130--Hb_000227_370 Hb_000914_130--Hb_000120_070 Hb_000085_230 Hb_000085_230 Hb_004218_160--Hb_000085_230 Hb_002660_040 Hb_002660_040 Hb_004218_160--Hb_002660_040 Hb_000527_140 Hb_000527_140 Hb_004218_160--Hb_000527_140 Hb_004218_160--Hb_000120_070 Hb_004218_160--Hb_000977_090 Hb_003556_070--Hb_073119_010 Hb_000098_250 Hb_000098_250 Hb_003556_070--Hb_000098_250 Hb_017604_020 Hb_017604_020 Hb_003556_070--Hb_017604_020 Hb_000280_110 Hb_000280_110 Hb_003556_070--Hb_000280_110 Hb_002343_020 Hb_002343_020 Hb_005649_010--Hb_002343_020 Hb_003964_010 Hb_003964_010 Hb_005649_010--Hb_003964_010 Hb_064985_010 Hb_064985_010 Hb_005649_010--Hb_064985_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_013938_010 Hb_013938_010 Hb_005649_010--Hb_013938_010 Hb_001318_110 Hb_001318_110 Hb_005649_010--Hb_001318_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0329472 6.30132 2.58902 2.09802 0.0126649 0.249404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.209741 0.353703 0.211538 3.98358 0.708151

CAGE analysis