Hb_004007_130

Information

Type -
Description -
Location Contig4007: 116446-122132
Sequence    

Annotation

kegg
ID rcu:RCOM_0579850
description hypothetical protein
nr
ID XP_012079401.1
description PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
swissprot
ID Q2TAW0
description Condensin-2 complex subunit G2 OS=Xenopus laevis GN=ncapg2 PE=1 SV=1
trembl
ID A0A067KIH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12531 PE=4 SV=1
Gene Ontology
ID GO:0005634
description arm repeat superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39856: 116556-117130 , PASA_asmbl_39857: 117134-117714 , PASA_asmbl_39858: 117728-118824 , PASA_asmbl_39859: 118932-119330 , PASA_asmbl_39861: 119640-119815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_130 0.0 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
2 Hb_002871_130 0.0894996835 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
3 Hb_002284_260 0.1091851273 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
4 Hb_003360_010 0.1168689806 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
5 Hb_004531_080 0.1169977013 - - hypothetical protein RCOM_1491960 [Ricinus communis]
6 Hb_006970_130 0.1194033471 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
7 Hb_024682_030 0.1197828859 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
8 Hb_124677_050 0.1225917559 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000431_100 0.1253171866 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
10 Hb_093458_020 0.1268648881 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
11 Hb_009339_040 0.1316690638 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000077_110 0.132497587 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
13 Hb_001524_120 0.1334508299 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
14 Hb_000003_060 0.1336821501 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
15 Hb_004968_040 0.1370115792 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
16 Hb_007101_040 0.1378659272 - - PREDICTED: MLP-like protein 423 [Populus euphratica]
17 Hb_002311_090 0.1379923979 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
18 Hb_000483_080 0.138463523 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
19 Hb_005183_150 0.139627701 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
20 Hb_007632_210 0.1413454399 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]

Gene co-expression network

sample Hb_004007_130 Hb_004007_130 Hb_002871_130 Hb_002871_130 Hb_004007_130--Hb_002871_130 Hb_002284_260 Hb_002284_260 Hb_004007_130--Hb_002284_260 Hb_003360_010 Hb_003360_010 Hb_004007_130--Hb_003360_010 Hb_004531_080 Hb_004531_080 Hb_004007_130--Hb_004531_080 Hb_006970_130 Hb_006970_130 Hb_004007_130--Hb_006970_130 Hb_024682_030 Hb_024682_030 Hb_004007_130--Hb_024682_030 Hb_002871_130--Hb_004531_080 Hb_011861_040 Hb_011861_040 Hb_002871_130--Hb_011861_040 Hb_002871_130--Hb_002284_260 Hb_093458_020 Hb_093458_020 Hb_002871_130--Hb_093458_020 Hb_000483_080 Hb_000483_080 Hb_002871_130--Hb_000483_080 Hb_002284_260--Hb_093458_020 Hb_124677_050 Hb_124677_050 Hb_002284_260--Hb_124677_050 Hb_002284_260--Hb_003360_010 Hb_000077_110 Hb_000077_110 Hb_002284_260--Hb_000077_110 Hb_003360_010--Hb_024682_030 Hb_000260_670 Hb_000260_670 Hb_003360_010--Hb_000260_670 Hb_000431_100 Hb_000431_100 Hb_003360_010--Hb_000431_100 Hb_003360_010--Hb_124677_050 Hb_001524_120 Hb_001524_120 Hb_003360_010--Hb_001524_120 Hb_005183_150 Hb_005183_150 Hb_003360_010--Hb_005183_150 Hb_007943_180 Hb_007943_180 Hb_004531_080--Hb_007943_180 Hb_000500_340 Hb_000500_340 Hb_004531_080--Hb_000500_340 Hb_001123_310 Hb_001123_310 Hb_004531_080--Hb_001123_310 Hb_004531_080--Hb_000483_080 Hb_005271_140 Hb_005271_140 Hb_006970_130--Hb_005271_140 Hb_000288_090 Hb_000288_090 Hb_006970_130--Hb_000288_090 Hb_000190_220 Hb_000190_220 Hb_006970_130--Hb_000190_220 Hb_006970_130--Hb_004531_080 Hb_004968_040 Hb_004968_040 Hb_006970_130--Hb_004968_040 Hb_000592_100 Hb_000592_100 Hb_024682_030--Hb_000592_100 Hb_024682_030--Hb_000431_100 Hb_024682_030--Hb_001524_120 Hb_000024_150 Hb_000024_150 Hb_024682_030--Hb_000024_150 Hb_001782_100 Hb_001782_100 Hb_024682_030--Hb_001782_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0590516 0.351084 2.95332 1.94237 0.0398781 0.0384945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.179514 0.0565078 0.054197 0.947883 0.443409

CAGE analysis