Hb_004007_200

Information

Type -
Description -
Location Contig4007: 175549-182214
Sequence    

Annotation

kegg
ID tcc:TCM_000776
description Phototropic-responsive NPH3 family protein isoform 1
nr
ID XP_012079389.1
description PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
swissprot
ID O80970
description BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1
trembl
ID A0A067K7G2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12523 PE=4 SV=1
Gene Ontology
ID GO:0009958
description btb poz domain-containing protein npy4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39877: 175567-182284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_200 0.0 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
2 Hb_000386_050 0.1042678768 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
3 Hb_187959_010 0.1096429226 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
4 Hb_001054_060 0.1160279232 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
5 Hb_000800_010 0.1207501676 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
6 Hb_002518_180 0.1332470359 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
7 Hb_006414_010 0.137428214 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
8 Hb_030312_030 0.1423429695 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
9 Hb_003030_010 0.1436230363 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
10 Hb_000465_450 0.1485970035 - - triacylglycerol lipase, putative [Ricinus communis]
11 Hb_005588_120 0.1554285323 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004129_010 0.1584199071 - - aspartate aminotransferase, putative [Ricinus communis]
13 Hb_000416_060 0.1621145149 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
14 Hb_029584_100 0.163955245 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
15 Hb_000032_600 0.1639795559 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_000977_150 0.1644957406 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
17 Hb_019654_110 0.1649563199 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
18 Hb_000959_120 0.1653799766 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
19 Hb_000622_060 0.1653863371 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
20 Hb_007229_050 0.1654710387 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004007_200 Hb_004007_200 Hb_000386_050 Hb_000386_050 Hb_004007_200--Hb_000386_050 Hb_187959_010 Hb_187959_010 Hb_004007_200--Hb_187959_010 Hb_001054_060 Hb_001054_060 Hb_004007_200--Hb_001054_060 Hb_000800_010 Hb_000800_010 Hb_004007_200--Hb_000800_010 Hb_002518_180 Hb_002518_180 Hb_004007_200--Hb_002518_180 Hb_006414_010 Hb_006414_010 Hb_004007_200--Hb_006414_010 Hb_000386_050--Hb_000800_010 Hb_000386_050--Hb_187959_010 Hb_000386_050--Hb_006414_010 Hb_000386_050--Hb_001054_060 Hb_012132_020 Hb_012132_020 Hb_000386_050--Hb_012132_020 Hb_003030_010 Hb_003030_010 Hb_187959_010--Hb_003030_010 Hb_187959_010--Hb_001054_060 Hb_007590_100 Hb_007590_100 Hb_187959_010--Hb_007590_100 Hb_187959_010--Hb_006414_010 Hb_007134_030 Hb_007134_030 Hb_187959_010--Hb_007134_030 Hb_000032_600 Hb_000032_600 Hb_001054_060--Hb_000032_600 Hb_067664_010 Hb_067664_010 Hb_001054_060--Hb_067664_010 Hb_000977_150 Hb_000977_150 Hb_001054_060--Hb_000977_150 Hb_030312_030 Hb_030312_030 Hb_001054_060--Hb_030312_030 Hb_000997_320 Hb_000997_320 Hb_001054_060--Hb_000997_320 Hb_000416_060 Hb_000416_060 Hb_000800_010--Hb_000416_060 Hb_005588_120 Hb_005588_120 Hb_000800_010--Hb_005588_120 Hb_000800_010--Hb_006414_010 Hb_004129_010 Hb_004129_010 Hb_000800_010--Hb_004129_010 Hb_001699_170 Hb_001699_170 Hb_000800_010--Hb_001699_170 Hb_132840_030 Hb_132840_030 Hb_000800_010--Hb_132840_030 Hb_033594_100 Hb_033594_100 Hb_002518_180--Hb_033594_100 Hb_009535_030 Hb_009535_030 Hb_002518_180--Hb_009535_030 Hb_002518_180--Hb_187959_010 Hb_000970_020 Hb_000970_020 Hb_002518_180--Hb_000970_020 Hb_098533_010 Hb_098533_010 Hb_002518_180--Hb_098533_010 Hb_007894_070 Hb_007894_070 Hb_006414_010--Hb_007894_070 Hb_001486_100 Hb_001486_100 Hb_006414_010--Hb_001486_100 Hb_000210_040 Hb_000210_040 Hb_006414_010--Hb_000210_040 Hb_002740_100 Hb_002740_100 Hb_006414_010--Hb_002740_100 Hb_000659_040 Hb_000659_040 Hb_006414_010--Hb_000659_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.356832 8.66299 4.60834 12.319 0.180569 0.669697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.384776 2.68188 1.51136 10.1537 15.9578

CAGE analysis