Hb_004007_210

Information

Type transcription factor
Description TF Family: GNAT
Location Contig4007: 186467-188510
Sequence    

Annotation

kegg
ID rcu:RCOM_0578960
description N-acetyltransferase, putative
nr
ID XP_002525259.1
description N-acetyltransferase, putative [Ricinus communis]
swissprot
ID O64815
description Probable N-acetyltransferase HLS1-like OS=Arabidopsis thaliana GN=At2g23060 PE=2 SV=1
trembl
ID B9SGZ0
description N-acetyltransferase, putative OS=Ricinus communis GN=RCOM_0578960 PE=4 SV=1
Gene Ontology
ID GO:0008080
description probable n-acetyltransferase hls1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39879: 186416-186975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_210 0.0 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
2 Hb_000230_250 0.1310332009 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
3 Hb_019026_040 0.1320599503 - - S-locus lectin protein kinase family protein [Theobroma cacao]
4 Hb_005054_320 0.1331420937 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
5 Hb_010175_050 0.1448710552 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
6 Hb_005772_020 0.1462946502 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
7 Hb_004880_120 0.1579655562 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
8 Hb_000032_590 0.1601142412 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
9 Hb_011457_080 0.1613732388 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
10 Hb_010180_050 0.1655964016 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
11 Hb_002030_100 0.1687968692 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
12 Hb_000156_080 0.1720664033 - - Potassium channel KAT2, putative [Ricinus communis]
13 Hb_004884_210 0.1721267141 - - PREDICTED: mitoferrin-like [Jatropha curcas]
14 Hb_005240_010 0.1726956691 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
15 Hb_034013_010 0.1733804823 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
16 Hb_003811_030 0.1778009544 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
17 Hb_171900_110 0.1802181775 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
18 Hb_006358_030 0.18364374 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
19 Hb_008341_010 0.1836903362 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
20 Hb_010055_020 0.1853352323 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_004007_210 Hb_004007_210 Hb_000230_250 Hb_000230_250 Hb_004007_210--Hb_000230_250 Hb_019026_040 Hb_019026_040 Hb_004007_210--Hb_019026_040 Hb_005054_320 Hb_005054_320 Hb_004007_210--Hb_005054_320 Hb_010175_050 Hb_010175_050 Hb_004007_210--Hb_010175_050 Hb_005772_020 Hb_005772_020 Hb_004007_210--Hb_005772_020 Hb_004880_120 Hb_004880_120 Hb_004007_210--Hb_004880_120 Hb_000230_250--Hb_004880_120 Hb_000230_250--Hb_005772_020 Hb_000230_250--Hb_010175_050 Hb_010180_050 Hb_010180_050 Hb_000230_250--Hb_010180_050 Hb_000032_590 Hb_000032_590 Hb_000230_250--Hb_000032_590 Hb_003811_030 Hb_003811_030 Hb_019026_040--Hb_003811_030 Hb_107552_020 Hb_107552_020 Hb_019026_040--Hb_107552_020 Hb_019026_040--Hb_010175_050 Hb_000347_380 Hb_000347_380 Hb_019026_040--Hb_000347_380 Hb_036492_020 Hb_036492_020 Hb_019026_040--Hb_036492_020 Hb_005054_320--Hb_010180_050 Hb_010055_020 Hb_010055_020 Hb_005054_320--Hb_010055_020 Hb_005054_320--Hb_019026_040 Hb_183025_010 Hb_183025_010 Hb_005054_320--Hb_183025_010 Hb_000049_290 Hb_000049_290 Hb_005054_320--Hb_000049_290 Hb_008341_010 Hb_008341_010 Hb_010175_050--Hb_008341_010 Hb_010175_050--Hb_005772_020 Hb_004241_170 Hb_004241_170 Hb_010175_050--Hb_004241_170 Hb_010175_050--Hb_003811_030 Hb_005240_010 Hb_005240_010 Hb_005772_020--Hb_005240_010 Hb_005772_020--Hb_000032_590 Hb_006358_030 Hb_006358_030 Hb_005772_020--Hb_006358_030 Hb_171900_110 Hb_171900_110 Hb_005772_020--Hb_171900_110 Hb_137701_020 Hb_137701_020 Hb_004880_120--Hb_137701_020 Hb_004880_120--Hb_010175_050 Hb_063869_010 Hb_063869_010 Hb_004880_120--Hb_063869_010 Hb_004880_120--Hb_005772_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116789 8.99559 3.55908 0.881938 0.224827 0.149537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0763451 0 0 0.132197 5.4839

CAGE analysis