Hb_004010_080

Information

Type -
Description -
Location Contig4010: 75864-78549
Sequence    

Annotation

kegg
ID rcu:RCOM_1315050
description alcohol dehydrogenase, putative (EC:1.1.1.255)
nr
ID XP_002518961.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9CAI3
description Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1
trembl
ID B9RYZ2
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_1315050 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable cinnamyl alcohol dehydrogenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39891: 77246-77467 , PASA_asmbl_39892: 77654-78622 , PASA_asmbl_39893: 77654-82594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004010_080 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_000858_050 0.1185700486 - - kinase, putative [Ricinus communis]
3 Hb_001001_130 0.1187532058 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
4 Hb_000270_040 0.1188619475 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000282_100 0.1247624582 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
6 Hb_015807_020 0.1262401872 - - gibberellin 20-oxidase, putative [Ricinus communis]
7 Hb_005029_030 0.1275156094 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
8 Hb_004542_030 0.1277232771 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
9 Hb_002027_420 0.1294220262 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
10 Hb_002041_020 0.1306983932 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
11 Hb_001951_040 0.1336141175 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
12 Hb_052139_010 0.141229664 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
13 Hb_001135_190 0.1425714331 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
14 Hb_004855_030 0.1441410122 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_000349_150 0.1454592345 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
16 Hb_000018_130 0.1469897429 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
17 Hb_000083_010 0.1479578611 - - -
18 Hb_001610_100 0.1487923001 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
19 Hb_007122_010 0.1488486635 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
20 Hb_001210_110 0.1505974164 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004010_080 Hb_004010_080 Hb_000858_050 Hb_000858_050 Hb_004010_080--Hb_000858_050 Hb_001001_130 Hb_001001_130 Hb_004010_080--Hb_001001_130 Hb_000270_040 Hb_000270_040 Hb_004010_080--Hb_000270_040 Hb_000282_100 Hb_000282_100 Hb_004010_080--Hb_000282_100 Hb_015807_020 Hb_015807_020 Hb_004010_080--Hb_015807_020 Hb_005029_030 Hb_005029_030 Hb_004010_080--Hb_005029_030 Hb_000858_050--Hb_015807_020 Hb_000858_050--Hb_000282_100 Hb_000026_060 Hb_000026_060 Hb_000858_050--Hb_000026_060 Hb_004146_030 Hb_004146_030 Hb_000858_050--Hb_004146_030 Hb_000858_050--Hb_005029_030 Hb_001289_050 Hb_001289_050 Hb_000858_050--Hb_001289_050 Hb_007101_090 Hb_007101_090 Hb_001001_130--Hb_007101_090 Hb_052139_010 Hb_052139_010 Hb_001001_130--Hb_052139_010 Hb_001856_290 Hb_001856_290 Hb_001001_130--Hb_001856_290 Hb_000135_080 Hb_000135_080 Hb_001001_130--Hb_000135_080 Hb_012528_040 Hb_012528_040 Hb_001001_130--Hb_012528_040 Hb_001001_130--Hb_000858_050 Hb_004855_030 Hb_004855_030 Hb_000270_040--Hb_004855_030 Hb_000083_010 Hb_000083_010 Hb_000270_040--Hb_000083_010 Hb_000270_040--Hb_052139_010 Hb_003208_010 Hb_003208_010 Hb_000270_040--Hb_003208_010 Hb_000977_260 Hb_000977_260 Hb_000270_040--Hb_000977_260 Hb_101097_010 Hb_101097_010 Hb_000270_040--Hb_101097_010 Hb_000282_100--Hb_001289_050 Hb_009093_020 Hb_009093_020 Hb_000282_100--Hb_009093_020 Hb_000029_390 Hb_000029_390 Hb_000282_100--Hb_000029_390 Hb_000841_040 Hb_000841_040 Hb_000282_100--Hb_000841_040 Hb_004631_020 Hb_004631_020 Hb_000282_100--Hb_004631_020 Hb_001832_180 Hb_001832_180 Hb_000282_100--Hb_001832_180 Hb_001579_050 Hb_001579_050 Hb_015807_020--Hb_001579_050 Hb_015807_020--Hb_001289_050 Hb_004459_050 Hb_004459_050 Hb_015807_020--Hb_004459_050 Hb_077151_010 Hb_077151_010 Hb_015807_020--Hb_077151_010 Hb_015807_020--Hb_000282_100 Hb_015817_010 Hb_015817_010 Hb_005029_030--Hb_015817_010 Hb_005029_030--Hb_000270_040 Hb_080791_010 Hb_080791_010 Hb_005029_030--Hb_080791_010 Hb_000476_030 Hb_000476_030 Hb_005029_030--Hb_000476_030 Hb_005029_030--Hb_000135_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0182401 0.541426 0.126564 0 0.0160413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0655915 0 0.105146 3.25367

CAGE analysis