Hb_004012_010

Information

Type -
Description -
Location Contig4012: 21618-25631
Sequence    

Annotation

kegg
ID rcu:RCOM_0465830
description 30S ribosomal protein S8, putative
nr
ID XP_012474480.1
description PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
swissprot
ID P42798
description 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2
trembl
ID A0A0D2LX99
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G108200 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s15a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39895: 21724-23593 , PASA_asmbl_39896: 21688-23612
cDNA
(Sanger)
(ID:Location)		 020_L15.ab1: 21688-23610 , 032_P22.ab1: 21772-23612 , 052_E05.ab1: 21688-23610

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004012_010 0.0 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
2 Hb_024835_030 0.0555884875 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
3 Hb_026198_050 0.0667943322 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
4 Hb_006775_080 0.071424429 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
5 Hb_004920_040 0.0732617664 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
6 Hb_003185_020 0.0736929809 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
7 Hb_002762_060 0.0746901992 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
8 Hb_000056_340 0.0775216866 - - 60S ribosomal protein L34A [Hevea brasiliensis]
9 Hb_021068_050 0.0831484468 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
10 Hb_001951_110 0.0847714194 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
11 Hb_000392_270 0.0861960733 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
12 Hb_002529_100 0.0906035528 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
13 Hb_157854_010 0.0906897272 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
14 Hb_010449_020 0.0910277465 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
15 Hb_000045_130 0.0913286201 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
16 Hb_004055_010 0.0946237454 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_159558_030 0.0968957484 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
18 Hb_005489_130 0.0980711705 - - calmodulin, putative [Ricinus communis]
19 Hb_001767_100 0.0985096603 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
20 Hb_002374_490 0.1013540639 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004012_010 Hb_004012_010 Hb_024835_030 Hb_024835_030 Hb_004012_010--Hb_024835_030 Hb_026198_050 Hb_026198_050 Hb_004012_010--Hb_026198_050 Hb_006775_080 Hb_006775_080 Hb_004012_010--Hb_006775_080 Hb_004920_040 Hb_004920_040 Hb_004012_010--Hb_004920_040 Hb_003185_020 Hb_003185_020 Hb_004012_010--Hb_003185_020 Hb_002762_060 Hb_002762_060 Hb_004012_010--Hb_002762_060 Hb_024835_030--Hb_002762_060 Hb_009711_030 Hb_009711_030 Hb_024835_030--Hb_009711_030 Hb_024835_030--Hb_004920_040 Hb_022250_040 Hb_022250_040 Hb_024835_030--Hb_022250_040 Hb_000056_340 Hb_000056_340 Hb_024835_030--Hb_000056_340 Hb_000392_270 Hb_000392_270 Hb_026198_050--Hb_000392_270 Hb_026198_050--Hb_002762_060 Hb_003551_020 Hb_003551_020 Hb_026198_050--Hb_003551_020 Hb_001138_050 Hb_001138_050 Hb_026198_050--Hb_001138_050 Hb_004722_060 Hb_004722_060 Hb_026198_050--Hb_004722_060 Hb_006775_080--Hb_004920_040 Hb_006775_080--Hb_000056_340 Hb_006824_020 Hb_006824_020 Hb_006775_080--Hb_006824_020 Hb_006775_080--Hb_024835_030 Hb_021068_050 Hb_021068_050 Hb_006775_080--Hb_021068_050 Hb_004920_040--Hb_002762_060 Hb_004920_040--Hb_001138_050 Hb_004221_010 Hb_004221_010 Hb_004920_040--Hb_004221_010 Hb_010449_020 Hb_010449_020 Hb_003185_020--Hb_010449_020 Hb_157854_010 Hb_157854_010 Hb_003185_020--Hb_157854_010 Hb_003185_020--Hb_002762_060 Hb_003185_020--Hb_000392_270 Hb_003185_020--Hb_004722_060 Hb_002762_060--Hb_157854_010 Hb_002762_060--Hb_004221_010 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1484.59 594.874 183.18 291.208 1063.85 971.024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1484.09 1557.47 887.693 343.135 74.1134

CAGE analysis