Hb_004020_020

Information

Type -
Description -
Location Contig4020: 9958-11916
Sequence    

Annotation

kegg
ID rcu:RCOM_0859780
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012079453.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]
swissprot
ID Q9FH87
description Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
trembl
ID A0A067KAS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12579 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39944: 10510-11210 , PASA_asmbl_39945: 11300-11887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004020_020 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]
2 Hb_003370_050 0.0799439185 - - PREDICTED: uncharacterized protein LOC103697550 [Phoenix dactylifera]
3 Hb_002667_050 0.0888924015 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
4 Hb_000028_390 0.0921902385 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
5 Hb_002099_080 0.0929841488 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
6 Hb_003294_090 0.0954995888 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007820_010 0.0999369815 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
8 Hb_004449_080 0.100532015 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
9 Hb_000388_090 0.1011143678 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
10 Hb_005901_020 0.1041974132 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
11 Hb_002316_160 0.105112668 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
12 Hb_012322_010 0.1077910071 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_002942_100 0.108639453 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
14 Hb_000174_180 0.1152945644 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002063_020 0.1153018088 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
16 Hb_006915_030 0.1174879664 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
17 Hb_007441_220 0.1188137102 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
18 Hb_000260_010 0.1193581893 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
19 Hb_187953_010 0.1197574008 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
20 Hb_009296_040 0.1205891688 - - hypothetical protein L484_007435 [Morus notabilis]

Gene co-expression network

sample Hb_004020_020 Hb_004020_020 Hb_003370_050 Hb_003370_050 Hb_004020_020--Hb_003370_050 Hb_002667_050 Hb_002667_050 Hb_004020_020--Hb_002667_050 Hb_000028_390 Hb_000028_390 Hb_004020_020--Hb_000028_390 Hb_002099_080 Hb_002099_080 Hb_004020_020--Hb_002099_080 Hb_003294_090 Hb_003294_090 Hb_004020_020--Hb_003294_090 Hb_007820_010 Hb_007820_010 Hb_004020_020--Hb_007820_010 Hb_004449_080 Hb_004449_080 Hb_003370_050--Hb_004449_080 Hb_003370_050--Hb_000028_390 Hb_000999_050 Hb_000999_050 Hb_003370_050--Hb_000999_050 Hb_004607_050 Hb_004607_050 Hb_003370_050--Hb_004607_050 Hb_003370_050--Hb_003294_090 Hb_002667_050--Hb_002099_080 Hb_005901_020 Hb_005901_020 Hb_002667_050--Hb_005901_020 Hb_002667_050--Hb_003294_090 Hb_001449_040 Hb_001449_040 Hb_002667_050--Hb_001449_040 Hb_000388_090 Hb_000388_090 Hb_002667_050--Hb_000388_090 Hb_009296_040 Hb_009296_040 Hb_000028_390--Hb_009296_040 Hb_001876_010 Hb_001876_010 Hb_000028_390--Hb_001876_010 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_000028_390--Hb_004449_080 Hb_000140_210 Hb_000140_210 Hb_000028_390--Hb_000140_210 Hb_000011_060 Hb_000011_060 Hb_000028_390--Hb_000011_060 Hb_002099_080--Hb_007820_010 Hb_002055_040 Hb_002055_040 Hb_002099_080--Hb_002055_040 Hb_002099_080--Hb_009296_040 Hb_002063_020 Hb_002063_020 Hb_002099_080--Hb_002063_020 Hb_002099_080--Hb_000388_090 Hb_003253_040 Hb_003253_040 Hb_003294_090--Hb_003253_040 Hb_003294_090--Hb_005901_020 Hb_002740_110 Hb_002740_110 Hb_003294_090--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003294_090--Hb_010174_110 Hb_015175_020 Hb_015175_020 Hb_003294_090--Hb_015175_020 Hb_003294_090--Hb_002063_020 Hb_007820_010--Hb_002055_040 Hb_003032_020 Hb_003032_020 Hb_007820_010--Hb_003032_020 Hb_000366_040 Hb_000366_040 Hb_007820_010--Hb_000366_040 Hb_000204_120 Hb_000204_120 Hb_007820_010--Hb_000204_120 Hb_000352_190 Hb_000352_190 Hb_007820_010--Hb_000352_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.64943 6.45211 1.86329 7.41528 5.61895 10.3722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.58863 4.23373 12.8796 8.13429 11.6667

CAGE analysis