Hb_004020_030

Information

Type -
Description -
Location Contig4020: 13658-17181
Sequence    

Annotation

kegg
ID rcu:RCOM_0859650
description Magnesium and cobalt efflux protein corC, putative
nr
ID XP_002530605.1
description Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
swissprot
ID Q9ZQR4
description DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2
trembl
ID B9SX86
description Magnesium and cobalt efflux protein corC, putative OS=Ricinus communis GN=RCOM_0859650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39949: 13627-17129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004020_030 0.0 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
2 Hb_002997_150 0.0754798625 - - hypothetical protein RCOM_1406750 [Ricinus communis]
3 Hb_004032_290 0.07639046 - - protein binding protein, putative [Ricinus communis]
4 Hb_001104_060 0.0783721398 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
5 Hb_002388_070 0.0797222697 - - ring finger protein, putative [Ricinus communis]
6 Hb_007185_050 0.0818143867 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
7 Hb_000230_410 0.0865671938 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
8 Hb_000449_070 0.0868736451 - - unnamed protein product [Vitis vinifera]
9 Hb_004650_120 0.0870019108 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
10 Hb_000395_310 0.088266612 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_000866_130 0.0887701597 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
12 Hb_000009_280 0.0887873359 - - Calmodulin, putative [Ricinus communis]
13 Hb_010142_060 0.0905161745 - - Blue copper protein precursor, putative [Ricinus communis]
14 Hb_000676_230 0.0919634771 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
15 Hb_000077_250 0.0923509956 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
16 Hb_002874_200 0.0949545932 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
17 Hb_000531_030 0.097825366 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000083_200 0.0988991789 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006717_060 0.0996146068 - - PREDICTED: peroxidase 42 [Jatropha curcas]
20 Hb_006153_140 0.0999695308 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004020_030 Hb_004020_030 Hb_002997_150 Hb_002997_150 Hb_004020_030--Hb_002997_150 Hb_004032_290 Hb_004032_290 Hb_004020_030--Hb_004032_290 Hb_001104_060 Hb_001104_060 Hb_004020_030--Hb_001104_060 Hb_002388_070 Hb_002388_070 Hb_004020_030--Hb_002388_070 Hb_007185_050 Hb_007185_050 Hb_004020_030--Hb_007185_050 Hb_000230_410 Hb_000230_410 Hb_004020_030--Hb_000230_410 Hb_001225_050 Hb_001225_050 Hb_002997_150--Hb_001225_050 Hb_002997_150--Hb_002388_070 Hb_028514_010 Hb_028514_010 Hb_002997_150--Hb_028514_010 Hb_000077_250 Hb_000077_250 Hb_002997_150--Hb_000077_250 Hb_000358_060 Hb_000358_060 Hb_002997_150--Hb_000358_060 Hb_002874_200 Hb_002874_200 Hb_004032_290--Hb_002874_200 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_004032_290--Hb_007185_050 Hb_000676_230 Hb_000676_230 Hb_004032_290--Hb_000676_230 Hb_000395_310 Hb_000395_310 Hb_004032_290--Hb_000395_310 Hb_004032_290--Hb_000230_410 Hb_000531_030 Hb_000531_030 Hb_001104_060--Hb_000531_030 Hb_011224_070 Hb_011224_070 Hb_001104_060--Hb_011224_070 Hb_003376_060 Hb_003376_060 Hb_001104_060--Hb_003376_060 Hb_001456_030 Hb_001456_030 Hb_001104_060--Hb_001456_030 Hb_000699_220 Hb_000699_220 Hb_001104_060--Hb_000699_220 Hb_000227_360 Hb_000227_360 Hb_001104_060--Hb_000227_360 Hb_002388_070--Hb_000395_310 Hb_002388_070--Hb_002874_200 Hb_002388_070--Hb_004032_290 Hb_002388_070--Hb_000230_410 Hb_001136_040 Hb_001136_040 Hb_007185_050--Hb_001136_040 Hb_000009_280 Hb_000009_280 Hb_007185_050--Hb_000009_280 Hb_007185_050--Hb_002874_200 Hb_009783_010 Hb_009783_010 Hb_007185_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_007185_050--Hb_001898_040 Hb_000230_410--Hb_000009_280 Hb_000230_410--Hb_002874_200 Hb_000230_410--Hb_009783_010 Hb_000230_410--Hb_007185_050 Hb_000230_410--Hb_001136_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.42632 3.93072 19.7583 0.0612152 0.127324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0293588 0.023098 0 0.368529 7.07044

CAGE analysis