Hb_004020_040

Information

Type -
Description -
Location Contig4020: 18886-25620
Sequence    

Annotation

kegg
ID rcu:RCOM_0859540
description GTP-binding protein hflx, putative
nr
ID XP_012079461.1
description PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
swissprot
ID Q0WTB4
description GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana GN=At3g49725 PE=2 SV=2
trembl
ID A0A067KIM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12581 PE=4 SV=1
Gene Ontology
ID GO:0005525
description gtp-binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39950: 19161-25647 , PASA_asmbl_39952: 21868-22344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004020_040 0.0 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
2 Hb_021374_010 0.0579100798 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
3 Hb_000035_110 0.0593991075 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
4 Hb_001040_100 0.061158738 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
5 Hb_000227_220 0.0613022738 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
6 Hb_001377_310 0.0631038915 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
7 Hb_001922_150 0.0631735412 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
8 Hb_001153_210 0.0639539835 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
9 Hb_001089_030 0.0647039998 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
10 Hb_000976_140 0.0662951536 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
11 Hb_008568_020 0.0674242791 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
12 Hb_003861_050 0.0687632059 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
13 Hb_015807_050 0.0699717189 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
14 Hb_002986_100 0.0702436478 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
15 Hb_005867_070 0.0710196118 - - DNA binding protein, putative [Ricinus communis]
16 Hb_032990_010 0.072318907 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
17 Hb_000313_220 0.0724325882 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
18 Hb_000035_470 0.0728171783 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
19 Hb_002073_190 0.0730079216 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
20 Hb_000710_040 0.0730967447 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_004020_040 Hb_004020_040 Hb_021374_010 Hb_021374_010 Hb_004020_040--Hb_021374_010 Hb_000035_110 Hb_000035_110 Hb_004020_040--Hb_000035_110 Hb_001040_100 Hb_001040_100 Hb_004020_040--Hb_001040_100 Hb_000227_220 Hb_000227_220 Hb_004020_040--Hb_000227_220 Hb_001377_310 Hb_001377_310 Hb_004020_040--Hb_001377_310 Hb_001922_150 Hb_001922_150 Hb_004020_040--Hb_001922_150 Hb_021374_010--Hb_000227_220 Hb_000170_090 Hb_000170_090 Hb_021374_010--Hb_000170_090 Hb_003943_010 Hb_003943_010 Hb_021374_010--Hb_003943_010 Hb_021374_010--Hb_001377_310 Hb_001089_030 Hb_001089_030 Hb_021374_010--Hb_001089_030 Hb_000035_110--Hb_001377_310 Hb_000005_220 Hb_000005_220 Hb_000035_110--Hb_000005_220 Hb_001635_160 Hb_001635_160 Hb_000035_110--Hb_001635_160 Hb_005460_050 Hb_005460_050 Hb_000035_110--Hb_005460_050 Hb_010150_020 Hb_010150_020 Hb_000035_110--Hb_010150_020 Hb_000035_470 Hb_000035_470 Hb_001040_100--Hb_000035_470 Hb_003159_140 Hb_003159_140 Hb_001040_100--Hb_003159_140 Hb_004319_080 Hb_004319_080 Hb_001040_100--Hb_004319_080 Hb_003438_050 Hb_003438_050 Hb_001040_100--Hb_003438_050 Hb_002681_090 Hb_002681_090 Hb_001040_100--Hb_002681_090 Hb_009976_020 Hb_009976_020 Hb_000227_220--Hb_009976_020 Hb_001814_030 Hb_001814_030 Hb_000227_220--Hb_001814_030 Hb_000710_040 Hb_000710_040 Hb_000227_220--Hb_000710_040 Hb_000227_220--Hb_003943_010 Hb_000227_220--Hb_001089_030 Hb_001377_310--Hb_000170_090 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_000976_140 Hb_000976_140 Hb_001922_150--Hb_000976_140 Hb_019280_030 Hb_019280_030 Hb_001922_150--Hb_019280_030 Hb_000313_220 Hb_000313_220 Hb_001922_150--Hb_000313_220 Hb_005730_040 Hb_005730_040 Hb_001922_150--Hb_005730_040 Hb_007416_340 Hb_007416_340 Hb_001922_150--Hb_007416_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.89201 6.52199 8.31961 6.78215 6.45879 8.52109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92273 6.113 3.04655 6.57395 7.15092

CAGE analysis