Hb_004020_060

Information

Type -
Description -
Location Contig4020: 85691-90367
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004020_060 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_007747_180 0.2288179046 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
3 Hb_000077_060 0.2355407488 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
4 Hb_002291_010 0.2481063874 - - ring finger protein, putative [Ricinus communis]
5 Hb_002486_010 0.2534873034 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
6 Hb_000011_420 0.2651001406 - - PREDICTED: GDSL esterase/lipase At1g29660-like [Citrus sinensis]
7 Hb_082182_010 0.2687094852 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
8 Hb_024468_010 0.2748688019 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
9 Hb_006453_010 0.2777160195 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
10 Hb_043485_010 0.2782335827 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
11 Hb_001621_070 0.2828950529 - - hypothetical protein POPTR_0008s05890g [Populus trichocarpa]
12 Hb_000802_110 0.2859821872 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
13 Hb_000990_060 0.2869755446 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
14 Hb_027467_010 0.2878420809 - - hypothetical protein PRUPE_ppa004106mg [Prunus persica]
15 Hb_028811_010 0.2902626012 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
16 Hb_001486_030 0.290484019 - - conserved hypothetical protein [Ricinus communis]
17 Hb_014613_010 0.2939482448 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_000226_080 0.2940973543 - - prephenate dehydrogenase, putative [Ricinus communis]
19 Hb_001114_070 0.2946150619 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
20 Hb_006268_020 0.296127474 - - hypothetical protein JCGZ_10516 [Jatropha curcas]

Gene co-expression network

sample Hb_004020_060 Hb_004020_060 Hb_007747_180 Hb_007747_180 Hb_004020_060--Hb_007747_180 Hb_000077_060 Hb_000077_060 Hb_004020_060--Hb_000077_060 Hb_002291_010 Hb_002291_010 Hb_004020_060--Hb_002291_010 Hb_002486_010 Hb_002486_010 Hb_004020_060--Hb_002486_010 Hb_000011_420 Hb_000011_420 Hb_004020_060--Hb_000011_420 Hb_082182_010 Hb_082182_010 Hb_004020_060--Hb_082182_010 Hb_007747_180--Hb_082182_010 Hb_007747_180--Hb_002486_010 Hb_007747_180--Hb_002291_010 Hb_013766_010 Hb_013766_010 Hb_007747_180--Hb_013766_010 Hb_002805_020 Hb_002805_020 Hb_007747_180--Hb_002805_020 Hb_000297_020 Hb_000297_020 Hb_007747_180--Hb_000297_020 Hb_006153_080 Hb_006153_080 Hb_000077_060--Hb_006153_080 Hb_008760_010 Hb_008760_010 Hb_000077_060--Hb_008760_010 Hb_000077_060--Hb_007747_180 Hb_005408_050 Hb_005408_050 Hb_000077_060--Hb_005408_050 Hb_002046_070 Hb_002046_070 Hb_000077_060--Hb_002046_070 Hb_001486_030 Hb_001486_030 Hb_002291_010--Hb_001486_030 Hb_028811_010 Hb_028811_010 Hb_002291_010--Hb_028811_010 Hb_001341_100 Hb_001341_100 Hb_002291_010--Hb_001341_100 Hb_003207_010 Hb_003207_010 Hb_002291_010--Hb_003207_010 Hb_001171_050 Hb_001171_050 Hb_002291_010--Hb_001171_050 Hb_004064_010 Hb_004064_010 Hb_002291_010--Hb_004064_010 Hb_002486_010--Hb_002805_020 Hb_002486_010--Hb_082182_010 Hb_002486_010--Hb_013766_010 Hb_007747_140 Hb_007747_140 Hb_002486_010--Hb_007747_140 Hb_002486_010--Hb_000011_420 Hb_002527_050 Hb_002527_050 Hb_000011_420--Hb_002527_050 Hb_000011_420--Hb_002291_010 Hb_149515_010 Hb_149515_010 Hb_000011_420--Hb_149515_010 Hb_000853_060 Hb_000853_060 Hb_000011_420--Hb_000853_060 Hb_000011_420--Hb_028811_010 Hb_011909_010 Hb_011909_010 Hb_000011_420--Hb_011909_010 Hb_005439_040 Hb_005439_040 Hb_082182_010--Hb_005439_040 Hb_043485_010 Hb_043485_010 Hb_082182_010--Hb_043485_010 Hb_015690_020 Hb_015690_020 Hb_082182_010--Hb_015690_020 Hb_024468_020 Hb_024468_020 Hb_082182_010--Hb_024468_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0426995 0.0101015 0.00305681 0 0.00390746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.020284 0.00798152 0.0613631 0.0474067 0.0171181

CAGE analysis