Hb_004021_020

Information

Type -
Description -
Location Contig4021: 36105-43818
Sequence    

Annotation

kegg
ID zma:103632453
description transposon Tf2-1 polyprotein
nr
ID XP_008652480.1
description PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
swissprot
ID Q6AVI0
description Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica GN=Os03g0733400 PE=2 SV=1
trembl
ID A5BJ41
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044100 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004021_020 0.0 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
2 Hb_000117_150 0.2025823821 - - hypothetical protein RCOM_0079810 [Ricinus communis]
3 Hb_005288_060 0.2059151105 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
4 Hb_002973_120 0.2061818665 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
5 Hb_005743_030 0.2089370528 - - hypothetical protein, partial [Pseudomonas fluorescens]
6 Hb_002529_070 0.2095558735 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
7 Hb_029727_010 0.2171584664 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_021428_010 0.2220939595 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
9 Hb_000230_170 0.2228927314 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
10 Hb_170878_020 0.2234823962 - - -
11 Hb_016835_020 0.2253969218 - - unnamed protein product [Coffea canephora]
12 Hb_001109_170 0.2259939725 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
13 Hb_000318_400 0.22647356 - - conserved hypothetical protein [Ricinus communis]
14 Hb_181463_020 0.2272374913 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
15 Hb_069147_010 0.2273176503 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
16 Hb_000169_100 0.227818472 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
17 Hb_025668_020 0.228305577 - - conserved hypothetical protein [Ricinus communis]
18 Hb_110737_010 0.2290603364 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
19 Hb_006775_110 0.2294315929 - - PREDICTED: uncharacterized protein LOC105649734 [Jatropha curcas]
20 Hb_040473_010 0.23033358 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]

Gene co-expression network

sample Hb_004021_020 Hb_004021_020 Hb_000117_150 Hb_000117_150 Hb_004021_020--Hb_000117_150 Hb_005288_060 Hb_005288_060 Hb_004021_020--Hb_005288_060 Hb_002973_120 Hb_002973_120 Hb_004021_020--Hb_002973_120 Hb_005743_030 Hb_005743_030 Hb_004021_020--Hb_005743_030 Hb_002529_070 Hb_002529_070 Hb_004021_020--Hb_002529_070 Hb_029727_010 Hb_029727_010 Hb_004021_020--Hb_029727_010 Hb_016835_020 Hb_016835_020 Hb_000117_150--Hb_016835_020 Hb_025668_020 Hb_025668_020 Hb_000117_150--Hb_025668_020 Hb_000009_430 Hb_000009_430 Hb_000117_150--Hb_000009_430 Hb_002255_080 Hb_002255_080 Hb_000117_150--Hb_002255_080 Hb_001597_090 Hb_001597_090 Hb_000117_150--Hb_001597_090 Hb_104835_010 Hb_104835_010 Hb_000117_150--Hb_104835_010 Hb_006594_080 Hb_006594_080 Hb_005288_060--Hb_006594_080 Hb_000313_230 Hb_000313_230 Hb_005288_060--Hb_000313_230 Hb_000414_180 Hb_000414_180 Hb_005288_060--Hb_000414_180 Hb_000574_250 Hb_000574_250 Hb_005288_060--Hb_000574_250 Hb_010068_050 Hb_010068_050 Hb_005288_060--Hb_010068_050 Hb_002874_030 Hb_002874_030 Hb_005288_060--Hb_002874_030 Hb_001793_040 Hb_001793_040 Hb_002973_120--Hb_001793_040 Hb_001385_070 Hb_001385_070 Hb_002973_120--Hb_001385_070 Hb_170878_020 Hb_170878_020 Hb_002973_120--Hb_170878_020 Hb_008055_030 Hb_008055_030 Hb_002973_120--Hb_008055_030 Hb_127552_050 Hb_127552_050 Hb_002973_120--Hb_127552_050 Hb_000968_070 Hb_000968_070 Hb_002973_120--Hb_000968_070 Hb_000318_400 Hb_000318_400 Hb_005743_030--Hb_000318_400 Hb_001005_040 Hb_001005_040 Hb_005743_030--Hb_001005_040 Hb_004864_010 Hb_004864_010 Hb_005743_030--Hb_004864_010 Hb_012023_010 Hb_012023_010 Hb_005743_030--Hb_012023_010 Hb_021443_050 Hb_021443_050 Hb_005743_030--Hb_021443_050 Hb_001534_040 Hb_001534_040 Hb_005743_030--Hb_001534_040 Hb_002016_130 Hb_002016_130 Hb_002529_070--Hb_002016_130 Hb_009848_060 Hb_009848_060 Hb_002529_070--Hb_009848_060 Hb_030885_010 Hb_030885_010 Hb_002529_070--Hb_030885_010 Hb_002529_070--Hb_001005_040 Hb_002529_070--Hb_170878_020 Hb_004052_060 Hb_004052_060 Hb_002529_070--Hb_004052_060 Hb_000169_100 Hb_000169_100 Hb_029727_010--Hb_000169_100 Hb_029727_010--Hb_001005_040 Hb_017225_030 Hb_017225_030 Hb_029727_010--Hb_017225_030 Hb_001288_050 Hb_001288_050 Hb_029727_010--Hb_001288_050 Hb_000260_730 Hb_000260_730 Hb_029727_010--Hb_000260_730 Hb_002631_270 Hb_002631_270 Hb_029727_010--Hb_002631_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00339601 0.0107028 0.0286757 0 0.00619777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0122693 0 0.0631015 0.105553

CAGE analysis