Hb_004021_100

Information

Type -
Description -
Location Contig4021: 92728-93135
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004021_100 0.0 - - -
2 Hb_017491_040 0.0956460461 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
3 Hb_058526_010 0.0986470625 - - -
4 Hb_003064_010 0.1047035506 - - Senescence-related gene 1 [Theobroma cacao]
5 Hb_127743_030 0.1049676323 - - amino acid transporter, putative [Ricinus communis]
6 Hb_007432_050 0.1099024897 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
7 Hb_003166_040 0.1117839291 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
8 Hb_001623_400 0.1146224498 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002042_200 0.116781972 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_000175_480 0.1280003907 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
11 Hb_004452_080 0.1283000706 - - ring finger protein, putative [Ricinus communis]
12 Hb_003786_060 0.1322441905 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
13 Hb_000288_140 0.1400919566 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
14 Hb_003734_120 0.1416898747 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
15 Hb_006006_070 0.1417524363 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_000238_060 0.1437721226 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
17 Hb_001405_100 0.144098328 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
18 Hb_004055_080 0.1451851311 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_166813_010 0.1464665441 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
20 Hb_000029_420 0.1496487338 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]

Gene co-expression network

sample Hb_004021_100 Hb_004021_100 Hb_017491_040 Hb_017491_040 Hb_004021_100--Hb_017491_040 Hb_058526_010 Hb_058526_010 Hb_004021_100--Hb_058526_010 Hb_003064_010 Hb_003064_010 Hb_004021_100--Hb_003064_010 Hb_127743_030 Hb_127743_030 Hb_004021_100--Hb_127743_030 Hb_007432_050 Hb_007432_050 Hb_004021_100--Hb_007432_050 Hb_003166_040 Hb_003166_040 Hb_004021_100--Hb_003166_040 Hb_002042_200 Hb_002042_200 Hb_017491_040--Hb_002042_200 Hb_008705_040 Hb_008705_040 Hb_017491_040--Hb_008705_040 Hb_001623_400 Hb_001623_400 Hb_017491_040--Hb_001623_400 Hb_004452_080 Hb_004452_080 Hb_017491_040--Hb_004452_080 Hb_166813_010 Hb_166813_010 Hb_017491_040--Hb_166813_010 Hb_058526_010--Hb_003166_040 Hb_058526_010--Hb_127743_030 Hb_004055_080 Hb_004055_080 Hb_058526_010--Hb_004055_080 Hb_007747_030 Hb_007747_030 Hb_058526_010--Hb_007747_030 Hb_007483_030 Hb_007483_030 Hb_058526_010--Hb_007483_030 Hb_002374_110 Hb_002374_110 Hb_058526_010--Hb_002374_110 Hb_000194_080 Hb_000194_080 Hb_003064_010--Hb_000194_080 Hb_000029_420 Hb_000029_420 Hb_003064_010--Hb_000029_420 Hb_003064_010--Hb_001623_400 Hb_003064_010--Hb_004055_080 Hb_049677_010 Hb_049677_010 Hb_003064_010--Hb_049677_010 Hb_127743_030--Hb_003166_040 Hb_127743_030--Hb_002374_110 Hb_127743_030--Hb_007432_050 Hb_027288_010 Hb_027288_010 Hb_127743_030--Hb_027288_010 Hb_127743_030--Hb_007483_030 Hb_007432_050--Hb_003166_040 Hb_022998_010 Hb_022998_010 Hb_007432_050--Hb_022998_010 Hb_000649_030 Hb_000649_030 Hb_007432_050--Hb_000649_030 Hb_007432_050--Hb_002374_110 Hb_007432_050--Hb_058526_010 Hb_003166_040--Hb_027288_010 Hb_003166_040--Hb_007483_030 Hb_003166_040--Hb_002374_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.538954 0.356809 0.627621 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.26609 0

CAGE analysis