Hb_004025_030

Information

Type -
Description -
Location Contig4025: 64559-67165
Sequence    

Annotation

kegg
ID cit:102616645
description methionine aminopeptidase 1A-like
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004025_030 0.0 - - -
2 Hb_077562_040 0.1106599153 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
3 Hb_000184_120 0.1267263116 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
4 Hb_023675_010 0.1387952087 - - -
5 Hb_000563_530 0.1445162827 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
6 Hb_004375_060 0.1493775413 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
7 Hb_027445_060 0.1508897143 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
8 Hb_001488_110 0.1523069078 - - -
9 Hb_000369_090 0.1621733628 - - -
10 Hb_033448_010 0.1655723367 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
11 Hb_007317_220 0.1668756569 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
12 Hb_000612_070 0.1734691441 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000366_100 0.1761918396 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
14 Hb_000914_060 0.1762931694 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
15 Hb_004852_020 0.1777759447 - - -
16 Hb_003507_040 0.180239693 - - hypothetical protein RCOM_1685970 [Ricinus communis]
17 Hb_002200_120 0.1810511402 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000603_220 0.1812250875 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
19 Hb_043061_010 0.1827351496 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
20 Hb_003327_060 0.1827829123 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004025_030 Hb_004025_030 Hb_077562_040 Hb_077562_040 Hb_004025_030--Hb_077562_040 Hb_000184_120 Hb_000184_120 Hb_004025_030--Hb_000184_120 Hb_023675_010 Hb_023675_010 Hb_004025_030--Hb_023675_010 Hb_000563_530 Hb_000563_530 Hb_004025_030--Hb_000563_530 Hb_004375_060 Hb_004375_060 Hb_004025_030--Hb_004375_060 Hb_027445_060 Hb_027445_060 Hb_004025_030--Hb_027445_060 Hb_077562_040--Hb_000184_120 Hb_077562_040--Hb_023675_010 Hb_077562_040--Hb_000563_530 Hb_000366_100 Hb_000366_100 Hb_077562_040--Hb_000366_100 Hb_001488_110 Hb_001488_110 Hb_077562_040--Hb_001488_110 Hb_002200_120 Hb_002200_120 Hb_000184_120--Hb_002200_120 Hb_000184_120--Hb_000563_530 Hb_033448_010 Hb_033448_010 Hb_000184_120--Hb_033448_010 Hb_000369_090 Hb_000369_090 Hb_000184_120--Hb_000369_090 Hb_023675_010--Hb_000366_100 Hb_036369_010 Hb_036369_010 Hb_023675_010--Hb_036369_010 Hb_004852_020 Hb_004852_020 Hb_023675_010--Hb_004852_020 Hb_001248_020 Hb_001248_020 Hb_023675_010--Hb_001248_020 Hb_012395_100 Hb_012395_100 Hb_023675_010--Hb_012395_100 Hb_000563_530--Hb_033448_010 Hb_000563_530--Hb_002200_120 Hb_000563_530--Hb_000369_090 Hb_000563_530--Hb_000366_100 Hb_002081_100 Hb_002081_100 Hb_004375_060--Hb_002081_100 Hb_000340_480 Hb_000340_480 Hb_004375_060--Hb_000340_480 Hb_178345_010 Hb_178345_010 Hb_004375_060--Hb_178345_010 Hb_001504_170 Hb_001504_170 Hb_004375_060--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_004375_060--Hb_013479_020 Hb_121236_010 Hb_121236_010 Hb_027445_060--Hb_121236_010 Hb_115919_010 Hb_115919_010 Hb_027445_060--Hb_115919_010 Hb_068946_010 Hb_068946_010 Hb_027445_060--Hb_068946_010 Hb_001095_060 Hb_001095_060 Hb_027445_060--Hb_001095_060 Hb_003813_100 Hb_003813_100 Hb_027445_060--Hb_003813_100 Hb_005305_060 Hb_005305_060 Hb_027445_060--Hb_005305_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.890131 0 0.0396349 0.0625732 1.45578 2.71023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44862 1.61246 0.325493 0.0392094 0

CAGE analysis