Hb_004030_040

Information

Type -
Description -
Location Contig4030: 52778-54746
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09270g
description POPTRDRAFT_801965; hypothetical protein
nr
ID XP_012088025.1
description PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
swissprot
ID Q3E8X3
description Protein NRT1/ PTR FAMILY 2.8 OS=Arabidopsis thaliana GN=NPF2.8 PE=2 SV=2
trembl
ID A0A067JYC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25108 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39962: 54329-54641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004030_040 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
2 Hb_006651_020 0.0274408291 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
3 Hb_002757_030 0.0369992206 - - unnamed protein product [Vitis vinifera]
4 Hb_009164_010 0.0430947775 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
5 Hb_010327_060 0.0583713308 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
6 Hb_153544_020 0.061676769 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
7 Hb_001856_250 0.0650443258 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
8 Hb_002757_040 0.0652111708 - - -
9 Hb_002734_020 0.0714531587 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
10 Hb_010833_010 0.0716559177 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
11 Hb_000487_350 0.080758016 - - conserved hypothetical protein [Ricinus communis]
12 Hb_019953_010 0.0808922552 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
13 Hb_000483_340 0.0809375976 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003754_010 0.0856702361 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
15 Hb_027577_010 0.0868269029 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
16 Hb_000581_010 0.0874585895 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
17 Hb_000594_010 0.0877732946 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
18 Hb_004957_010 0.0879070117 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
19 Hb_000997_220 0.0884535255 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
20 Hb_004884_040 0.0884580676 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]

Gene co-expression network

sample Hb_004030_040 Hb_004030_040 Hb_006651_020 Hb_006651_020 Hb_004030_040--Hb_006651_020 Hb_002757_030 Hb_002757_030 Hb_004030_040--Hb_002757_030 Hb_009164_010 Hb_009164_010 Hb_004030_040--Hb_009164_010 Hb_010327_060 Hb_010327_060 Hb_004030_040--Hb_010327_060 Hb_153544_020 Hb_153544_020 Hb_004030_040--Hb_153544_020 Hb_001856_250 Hb_001856_250 Hb_004030_040--Hb_001856_250 Hb_006651_020--Hb_153544_020 Hb_006651_020--Hb_002757_030 Hb_006651_020--Hb_001856_250 Hb_010833_010 Hb_010833_010 Hb_006651_020--Hb_010833_010 Hb_003754_010 Hb_003754_010 Hb_006651_020--Hb_003754_010 Hb_002757_030--Hb_009164_010 Hb_002757_030--Hb_010327_060 Hb_002757_040 Hb_002757_040 Hb_002757_030--Hb_002757_040 Hb_002757_030--Hb_153544_020 Hb_009164_010--Hb_002757_040 Hb_000594_010 Hb_000594_010 Hb_009164_010--Hb_000594_010 Hb_009164_010--Hb_010327_060 Hb_009164_010--Hb_006651_020 Hb_010327_060--Hb_002757_040 Hb_000868_020 Hb_000868_020 Hb_010327_060--Hb_000868_020 Hb_010327_060--Hb_153544_020 Hb_000028_090 Hb_000028_090 Hb_010327_060--Hb_000028_090 Hb_153544_020--Hb_003754_010 Hb_004957_010 Hb_004957_010 Hb_153544_020--Hb_004957_010 Hb_153544_020--Hb_010833_010 Hb_000997_220 Hb_000997_220 Hb_153544_020--Hb_000997_220 Hb_000483_340 Hb_000483_340 Hb_001856_250--Hb_000483_340 Hb_002734_020 Hb_002734_020 Hb_001856_250--Hb_002734_020 Hb_004884_040 Hb_004884_040 Hb_001856_250--Hb_004884_040 Hb_027577_010 Hb_027577_010 Hb_001856_250--Hb_027577_010 Hb_000729_040 Hb_000729_040 Hb_001856_250--Hb_000729_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0696857 2.26208 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.516072

CAGE analysis