Hb_004031_050

Information

Type -
Description -
Location Contig4031: 49095-50204
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07910g
description POPTRDRAFT_667694; mannitol dehydrogenase family protein
nr
ID AAW45741.1
description sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
swissprot
ID Q9ZRF1
description Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1
trembl
ID Q5I6D6
description Sinapyl alcohol dehydrogenase-like protein OS=Populus tremula x Populus tremuloides GN=SAD1 PE=2 SV=1
Gene Ontology
ID GO:0000166
description 8-hydroxygeraniol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39972: 49103-50485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004031_050 0.0 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
2 Hb_005214_050 0.0693802276 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
3 Hb_011355_020 0.0793013943 - - extensin, proline-rich protein, putative [Ricinus communis]
4 Hb_002897_030 0.0834310646 - - PREDICTED: methylesterase 17 [Jatropha curcas]
5 Hb_002522_040 0.0889609616 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
6 Hb_006026_020 0.0921201493 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
7 Hb_001198_180 0.0988848579 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
8 Hb_000568_020 0.099183543 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
9 Hb_000373_260 0.1067800348 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
10 Hb_001645_030 0.1083670668 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
11 Hb_092975_010 0.1086386276 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
12 Hb_189208_050 0.11053902 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
13 Hb_004970_100 0.1106046397 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
14 Hb_002518_020 0.112753948 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
15 Hb_000834_130 0.1146088472 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002304_100 0.1184329797 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
17 Hb_024868_010 0.1196834987 - - protein kinase, putative [Ricinus communis]
18 Hb_001247_090 0.1198568509 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
19 Hb_000975_090 0.1209815951 - - Zeamatin precursor, putative [Ricinus communis]
20 Hb_001562_030 0.1222238014 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004031_050 Hb_004031_050 Hb_005214_050 Hb_005214_050 Hb_004031_050--Hb_005214_050 Hb_011355_020 Hb_011355_020 Hb_004031_050--Hb_011355_020 Hb_002897_030 Hb_002897_030 Hb_004031_050--Hb_002897_030 Hb_002522_040 Hb_002522_040 Hb_004031_050--Hb_002522_040 Hb_006026_020 Hb_006026_020 Hb_004031_050--Hb_006026_020 Hb_001198_180 Hb_001198_180 Hb_004031_050--Hb_001198_180 Hb_000373_260 Hb_000373_260 Hb_005214_050--Hb_000373_260 Hb_005214_050--Hb_011355_020 Hb_000568_020 Hb_000568_020 Hb_005214_050--Hb_000568_020 Hb_004970_100 Hb_004970_100 Hb_005214_050--Hb_004970_100 Hb_005214_050--Hb_002897_030 Hb_011355_020--Hb_002897_030 Hb_011355_020--Hb_006026_020 Hb_011355_020--Hb_001198_180 Hb_011355_020--Hb_000373_260 Hb_002897_030--Hb_001198_180 Hb_004659_100 Hb_004659_100 Hb_002897_030--Hb_004659_100 Hb_002897_030--Hb_006026_020 Hb_092975_010 Hb_092975_010 Hb_002522_040--Hb_092975_010 Hb_122951_010 Hb_122951_010 Hb_002522_040--Hb_122951_010 Hb_001117_180 Hb_001117_180 Hb_002522_040--Hb_001117_180 Hb_153180_010 Hb_153180_010 Hb_002522_040--Hb_153180_010 Hb_178049_010 Hb_178049_010 Hb_002522_040--Hb_178049_010 Hb_006026_020--Hb_004970_100 Hb_006026_020--Hb_000373_260 Hb_000149_020 Hb_000149_020 Hb_006026_020--Hb_000149_020 Hb_001562_030 Hb_001562_030 Hb_001198_180--Hb_001562_030 Hb_030827_080 Hb_030827_080 Hb_001198_180--Hb_030827_080 Hb_002739_160 Hb_002739_160 Hb_001198_180--Hb_002739_160 Hb_008725_020 Hb_008725_020 Hb_001198_180--Hb_008725_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90636 144.489 194.985 581.161 1.04794 0.628833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117782 0 0.0845182 99.6182 59.3229

CAGE analysis