Hb_004032_050

Information

Type -
Description -
Location Contig4032: 47793-50899
Sequence    

Annotation

kegg
ID cit:102621285
description elongation factor 1-gamma-like
nr
ID KDO42761.1
description hypothetical protein CISIN_1g014592mg [Citrus sinensis]
swissprot
ID Q6YW46
description Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2
trembl
ID A0A067DVY3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014592mg PE=4 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-gamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39982: 45872-47269 , PASA_asmbl_39983: 47337-47803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_050 0.0 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
2 Hb_002276_190 0.0768054854 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
3 Hb_000307_170 0.0787128946 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
4 Hb_001623_580 0.0890344835 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
5 Hb_000175_490 0.0890559898 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
6 Hb_000768_030 0.0910907524 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
7 Hb_003605_070 0.0919288605 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
8 Hb_000997_020 0.0920764168 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
9 Hb_003126_040 0.0941449524 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004032_060 0.0978042886 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
11 Hb_006261_040 0.1057250956 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
12 Hb_003453_020 0.111053785 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
13 Hb_000290_020 0.1125284161 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
14 Hb_005288_160 0.1125675682 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
15 Hb_000209_090 0.1141999604 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_005928_060 0.1156503675 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
17 Hb_000172_120 0.1160737043 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
18 Hb_128548_020 0.1160792845 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
19 Hb_179511_010 0.1176279889 - - -
20 Hb_004096_170 0.120421341 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_050 Hb_004032_050 Hb_002276_190 Hb_002276_190 Hb_004032_050--Hb_002276_190 Hb_000307_170 Hb_000307_170 Hb_004032_050--Hb_000307_170 Hb_001623_580 Hb_001623_580 Hb_004032_050--Hb_001623_580 Hb_000175_490 Hb_000175_490 Hb_004032_050--Hb_000175_490 Hb_000768_030 Hb_000768_030 Hb_004032_050--Hb_000768_030 Hb_003605_070 Hb_003605_070 Hb_004032_050--Hb_003605_070 Hb_002276_190--Hb_003605_070 Hb_002276_190--Hb_001623_580 Hb_002276_190--Hb_000175_490 Hb_005288_160 Hb_005288_160 Hb_002276_190--Hb_005288_160 Hb_002276_190--Hb_000768_030 Hb_004032_060 Hb_004032_060 Hb_000307_170--Hb_004032_060 Hb_000307_170--Hb_002276_190 Hb_009801_010 Hb_009801_010 Hb_000307_170--Hb_009801_010 Hb_006261_040 Hb_006261_040 Hb_000307_170--Hb_006261_040 Hb_006501_150 Hb_006501_150 Hb_000307_170--Hb_006501_150 Hb_001623_580--Hb_003605_070 Hb_001623_580--Hb_005288_160 Hb_000209_090 Hb_000209_090 Hb_001623_580--Hb_000209_090 Hb_000284_200 Hb_000284_200 Hb_001623_580--Hb_000284_200 Hb_000175_490--Hb_000768_030 Hb_023226_060 Hb_023226_060 Hb_000175_490--Hb_023226_060 Hb_000997_020 Hb_000997_020 Hb_000175_490--Hb_000997_020 Hb_182026_010 Hb_182026_010 Hb_000175_490--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_000768_030--Hb_000733_060 Hb_000768_030--Hb_023226_060 Hb_003453_020 Hb_003453_020 Hb_000768_030--Hb_003453_020 Hb_003384_030 Hb_003384_030 Hb_000768_030--Hb_003384_030 Hb_003605_070--Hb_005288_160 Hb_003605_070--Hb_000209_090 Hb_001016_060 Hb_001016_060 Hb_003605_070--Hb_001016_060 Hb_000847_070 Hb_000847_070 Hb_003605_070--Hb_000847_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47281 0.42648 1.08313 0.459155 4.79837 3.09935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69925 1.96968 0.97719 0.606829 0.289786

CAGE analysis