Hb_004032_060

Information

Type -
Description -
Location Contig4032: 63209-63577
Sequence    

Annotation

kegg
ID mdm:103442035
description elongation factor 1-gamma
nr
ID BAP19108.1
description elongation factor 1 gamma-like protein, partial [Ipomoea nil]
swissprot
ID P34715
description Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1
trembl
ID A0A077JJJ2
description Elongation factor 1 gamma-like protein (Fragment) OS=Ipomoea nil GN=InEF1G PE=2 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-gamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39984: 63256-63752 , PASA_asmbl_39985: 61974-63752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_060 0.0 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
2 Hb_000307_170 0.0782175306 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
3 Hb_001951_260 0.090430666 - - 60S ribosomal protein L32, putative [Ricinus communis]
4 Hb_000482_110 0.0970078975 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_004032_050 0.0978042886 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
6 Hb_000290_020 0.0994426446 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
7 Hb_025236_040 0.105196432 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003126_040 0.1054598728 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004447_030 0.1100458829 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
10 Hb_000933_050 0.1107788835 - - protein binding protein, putative [Ricinus communis]
11 Hb_000529_080 0.1181235012 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
12 Hb_004525_100 0.1195847518 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
13 Hb_000661_160 0.1198623549 - - hexokinase [Manihot esculenta]
14 Hb_000621_060 0.1199293952 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
15 Hb_003746_040 0.1202154452 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
16 Hb_000098_190 0.1225540951 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
17 Hb_171554_090 0.1237417567 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
18 Hb_179511_010 0.1245471012 - - -
19 Hb_006096_040 0.1245618605 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
20 Hb_000270_360 0.1251033213 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]

Gene co-expression network

sample Hb_004032_060 Hb_004032_060 Hb_000307_170 Hb_000307_170 Hb_004032_060--Hb_000307_170 Hb_001951_260 Hb_001951_260 Hb_004032_060--Hb_001951_260 Hb_000482_110 Hb_000482_110 Hb_004032_060--Hb_000482_110 Hb_004032_050 Hb_004032_050 Hb_004032_060--Hb_004032_050 Hb_000290_020 Hb_000290_020 Hb_004032_060--Hb_000290_020 Hb_025236_040 Hb_025236_040 Hb_004032_060--Hb_025236_040 Hb_000307_170--Hb_004032_050 Hb_002276_190 Hb_002276_190 Hb_000307_170--Hb_002276_190 Hb_009801_010 Hb_009801_010 Hb_000307_170--Hb_009801_010 Hb_006261_040 Hb_006261_040 Hb_000307_170--Hb_006261_040 Hb_006501_150 Hb_006501_150 Hb_000307_170--Hb_006501_150 Hb_001951_260--Hb_025236_040 Hb_001951_260--Hb_000290_020 Hb_000084_290 Hb_000084_290 Hb_001951_260--Hb_000084_290 Hb_007558_010 Hb_007558_010 Hb_001951_260--Hb_007558_010 Hb_001047_100 Hb_001047_100 Hb_001951_260--Hb_001047_100 Hb_002400_390 Hb_002400_390 Hb_000482_110--Hb_002400_390 Hb_004447_030 Hb_004447_030 Hb_000482_110--Hb_004447_030 Hb_000265_150 Hb_000265_150 Hb_000482_110--Hb_000265_150 Hb_000920_280 Hb_000920_280 Hb_000482_110--Hb_000920_280 Hb_010968_010 Hb_010968_010 Hb_000482_110--Hb_010968_010 Hb_004032_050--Hb_002276_190 Hb_001623_580 Hb_001623_580 Hb_004032_050--Hb_001623_580 Hb_000175_490 Hb_000175_490 Hb_004032_050--Hb_000175_490 Hb_000768_030 Hb_000768_030 Hb_004032_050--Hb_000768_030 Hb_003605_070 Hb_003605_070 Hb_004032_050--Hb_003605_070 Hb_031939_010 Hb_031939_010 Hb_000290_020--Hb_031939_010 Hb_000290_020--Hb_001047_100 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_008887_050 Hb_008887_050 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220 Hb_017259_010 Hb_017259_010 Hb_025236_040--Hb_017259_010 Hb_025236_040--Hb_000084_290 Hb_000621_060 Hb_000621_060 Hb_025236_040--Hb_000621_060 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_025236_040--Hb_000290_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.64338 2.49441 4.26026 2.5539 14.9129 9.40133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.48466 8.45299 1.71738 1.7645 0.940714

CAGE analysis