Hb_004032_070

Information

Type -
Description -
Location Contig4032: 83235-88723
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_070 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_002553_090 0.001130007 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
3 Hb_006869_020 0.0031635851 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_008899_010 0.0087968174 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Nelumbo nucifera]
5 Hb_185340_010 0.0100033871 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
6 Hb_074336_010 0.0102183655 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
7 Hb_187024_010 0.0104616996 - - -
8 Hb_000496_040 0.0112758723 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002553_150 0.0117365991 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
10 Hb_013204_010 0.0141029202 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
11 Hb_000352_250 0.0144372282 - - -
12 Hb_008052_010 0.0147794191 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000029_250 0.0148554867 - - conserved hypothetical protein [Ricinus communis]
14 Hb_113631_010 0.0153706338 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_005144_200 0.0158470954 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
16 Hb_002400_130 0.0165082695 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
17 Hb_000984_090 0.0170360657 - - -
18 Hb_037949_010 0.0172044154 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
19 Hb_000107_010 0.0176361301 - - -
20 Hb_000000_350 0.0176867639 - - -

Gene co-expression network

sample Hb_004032_070 Hb_004032_070 Hb_002553_090 Hb_002553_090 Hb_004032_070--Hb_002553_090 Hb_006869_020 Hb_006869_020 Hb_004032_070--Hb_006869_020 Hb_008899_010 Hb_008899_010 Hb_004032_070--Hb_008899_010 Hb_185340_010 Hb_185340_010 Hb_004032_070--Hb_185340_010 Hb_074336_010 Hb_074336_010 Hb_004032_070--Hb_074336_010 Hb_187024_010 Hb_187024_010 Hb_004032_070--Hb_187024_010 Hb_002553_090--Hb_006869_020 Hb_002553_090--Hb_008899_010 Hb_002553_090--Hb_074336_010 Hb_000496_040 Hb_000496_040 Hb_002553_090--Hb_000496_040 Hb_002553_150 Hb_002553_150 Hb_002553_090--Hb_002553_150 Hb_006869_020--Hb_008899_010 Hb_006869_020--Hb_074336_010 Hb_006869_020--Hb_000496_040 Hb_006869_020--Hb_002553_150 Hb_008899_010--Hb_074336_010 Hb_008899_010--Hb_000496_040 Hb_008899_010--Hb_002553_150 Hb_008052_010 Hb_008052_010 Hb_008899_010--Hb_008052_010 Hb_185340_010--Hb_187024_010 Hb_013204_010 Hb_013204_010 Hb_185340_010--Hb_013204_010 Hb_000352_250 Hb_000352_250 Hb_185340_010--Hb_000352_250 Hb_000029_250 Hb_000029_250 Hb_185340_010--Hb_000029_250 Hb_113631_010 Hb_113631_010 Hb_185340_010--Hb_113631_010 Hb_005144_200 Hb_005144_200 Hb_185340_010--Hb_005144_200 Hb_074336_010--Hb_000496_040 Hb_074336_010--Hb_002553_150 Hb_074336_010--Hb_008052_010 Hb_002285_010 Hb_002285_010 Hb_074336_010--Hb_002285_010 Hb_187024_010--Hb_013204_010 Hb_187024_010--Hb_000352_250 Hb_187024_010--Hb_000029_250 Hb_187024_010--Hb_113631_010 Hb_187024_010--Hb_005144_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0393557 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0310326 0

CAGE analysis